RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 KIR2DL3P43628 341 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 FABP5Q01469 135 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 HYAL2Q12891 473 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 C9orf64Q5T6V5 341 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 MEDAGQ5VYS4 303 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 C12orf73Q69YU5 71 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 CNKSR3Q6P9H4 555 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 C19orf48Q6RUI8 117 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 LRRC56Q8IYG6 542 aaPredicted RBP11.45□□□□□ -0.58
CLIP3-201ENST00000360535 GHDCQ8N2G8 530 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 SLC25A46Q96AG3 418 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 FRMD6Q96NE9 622 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 SAP130Q9H0E3 1048 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.45□□□□□ -0.58
CLIP3-201ENST00000360535 PLEKHB1Q9UF11 243 aaPredicted RBP11.45□□□□□ -0.58
CLIP3-201ENST00000360535 OR1A2Q9Y585 309 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 DSPPQ9NZW4 1301 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 FAM170BA6NMN3 283 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 DVL2O14641 736 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 NDUFS4O43181 175 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 LILRB5O75023 590 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 EIF2S1P05198 315 aaKnown RBP11.44□□□□□ -0.58
CLIP3-201ENST00000360535 HMGN2P05204 90 aaKnown RBP11.44□□□□□ -0.58
CLIP3-201ENST00000360535 KELP23276 732 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 CXCR2P25025 360 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 DHCR24Q15392 516 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 SMARCD3Q6STE5 483 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 PRICKLE2Q7Z3G6 844 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 VRK2Q86Y07 508 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 MARCH9Q86YJ5 346 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 ZFPM2Q8WW38 1151 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 CAPNS2Q96L46 248 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 KATNB1Q9BVA0 655 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 MS4A8Q9BY19 250 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 CSNK1G3Q9Y6M4 447 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 DENND4CQ5VZ89 1909 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 SNRNP200O75643 2136 aaKnown RBP11.44□□□□□ -0.58
CLIP3-201ENST00000360535 FAM240BA0A1B0GVZ2 78 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 B4DXG7 233 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 CHRM4P08173 479 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 PIPP12273 146 aaPredicted RBP11.44□□□□□ -0.58
CLIP3-201ENST00000360535 WNT4P56705 351 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 NOGQ13253 232 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 ELOAQ14241 798 aaKnown RBP11.44□□□□□ -0.58
CLIP3-201ENST00000360535 CNIH2Q6PI25 160 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 ASB18Q6ZVZ8 466 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 DGLUCYQ7Z3D6 616 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 NUDT13Q86X67 352 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 FAM129CQ86XR2 697 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 CADM2Q8N3J6 435 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 Q8N402 240 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 APOBEC4Q8WW27 367 aaKnown RBP11.44□□□□□ -0.58
CLIP3-201ENST00000360535 LRRC3BQ96PB8 259 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 WACQ9BTA9 647 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 ZNF717Q9BY31 904 aaPredicted RBP11.44□□□□□ -0.58
CLIP3-201ENST00000360535 NEUROD4Q9HD90 331 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 A4GALTQ9NPC4 353 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 GIMAP4Q9NUV9 329 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 AP1M2Q9Y6Q5 423 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 ARID1BQ8NFD5 2236 aaPredicted RBP11.44□□□□□ -0.58
CLIP3-201ENST00000360535 LOC102723532A0A0G2JNH3 316 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 ERI3O43414 337 aaKnown RBP11.44□□□□□ -0.58
CLIP3-201ENST00000360535 HRO43593 1189 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 SLC2A10O95528 541 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 LALBAP00709 142 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 ACP5P13686 325 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 MTNR1AP48039 350 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 SLC9A3P48764 834 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 CCR8P51685 355 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 CLDN2P57739 230 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 TEKQ02763 1124 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 PIP5KL1Q5T9C9 394 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 ZNF438Q7Z4V0 828 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 KIF18BQ86Y91 864 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 ANKK1Q8NFD2 765 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 UFD1Q92890 307 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 HDHD2Q9H0R4 259 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 KCNK6Q9Y257 313 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 GSTK1Q9Y2Q3 226 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 GRIP1Q9Y3R0 1128 aa11.44□□□□□ -0.58
CLIP3-201ENST00000360535 ZC3H12DA2A288 527 aaKnown RBP11.43□□□□□ -0.58
CLIP3-201ENST00000360535 FAM172BPA6NC97 362 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 A8MVJ9 347 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 GNSP15586 552 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 ACADLP28330 430 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 SMSP52788 366 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 CTBP2P56545 445 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 SMIM11AP58511 58 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 Q5BKY6 102 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 SLC35F1Q5T1Q4 408 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 FAM46CQ5VWP2 391 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 IL20RBQ6UXL0 311 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 TBC1D19Q8N5T2 526 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 BBS1Q8NFJ9 593 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 SLC7A6Q92536 515 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 RGMAQ96B86 450 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 COQ10AQ96MF6 247 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 TTTY10Q9BZA0 68 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 ZBP1Q9H171 429 aa11.43□□□□□ -0.58
CLIP3-201ENST00000360535 CAPN10Q9HC96 672 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms