RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 DEFA5Q01523 94 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 SNTB2Q13425 540 aaKnown RBP11.17□□□□□ -0.62
COL9A1-202ENST00000357250 BORAQ6PGQ7 559 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 ENPP6Q6UWR7 440 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 LRRC69Q6ZNQ3 347 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 PIAS4Q8N2W9 510 aaPredicted RBP11.17□□□□□ -0.62
COL9A1-202ENST00000357250 CDRT4Q8N9R6 151 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 OR7G3Q8NG95 312 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 OR51A7Q8NH64 312 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 STOML3Q8TAV4 291 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 TRMT2BQ96GJ1 504 aaKnown RBP11.17□□□□□ -0.62
COL9A1-202ENST00000357250 SORT1Q99523 831 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 CDCA3Q99618 268 aaPredicted RBP11.17□□□□□ -0.62
COL9A1-202ENST00000357250 DEFB126Q9BYW3 111 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 GPN2Q9H9Y4 310 aaPredicted RBP11.17□□□□□ -0.62
COL9A1-202ENST00000357250 NANSQ9NR45 359 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 NUP50Q9UKX7 468 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 SLC7A11Q9UPY5 501 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 PADI2Q9Y2J8 665 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 RP1L1Q8IWN7 2480 aaPredicted RBP11.17□□□□□ -0.62
COL9A1-202ENST00000357250 TTLL8A6PVC2 850 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 SYNGR4O95473 234 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 GPX3P22352 226 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 BMPR1AP36894 532 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 CEBPGP53567 150 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 ACTBP60709 375 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 ACTG1P63261 375 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 TMEM236Q5W0B7 351 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 TMEM107Q6UX40 140 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 MAMDC2Q7Z304 686 aaPredicted RBP11.17□□□□□ -0.62
COL9A1-202ENST00000357250 ARHGAP12Q8IWW6 846 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 ALDH16A1Q8IZ83 802 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 C17orf50Q8WW18 174 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 MS4A4EQ96PG1 132 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 ABCG5Q9H222 651 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 DCAF13Q9NV06 445 aaKnown RBP11.17□□□□□ -0.62
COL9A1-202ENST00000357250 HPF1Q9NWY4 346 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 PTGDR2Q9Y5Y4 395 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 USP3Q9Y6I4 520 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 TRBV2A0A0J9YWF9 115 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 RFPL2O75678 378 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 RAD51DO75771 328 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 SLC16A8O95907 504 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 HBQ1P09105 142 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 T-ENOLP0DO92 83 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 CKMT1AP12532 417 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 PRKCAP17252 672 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 ATF4P18848 351 aaPredicted RBP11.17□□□□□ -0.62
COL9A1-202ENST00000357250 AK4P27144 223 aaPredicted RBP11.17□□□□□ -0.62
COL9A1-202ENST00000357250 ID2Q02363 134 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 C1orf189Q5VU69 101 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 UNQ6126/PRO20091Q6UXV3 157 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 LARP4Q71RC2 724 aaKnown RBP eCLIP11.17□□□□□ -0.62
COL9A1-202ENST00000357250 FTMTQ8N4E7 242 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 OR4K3Q96R72 315 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 SERINC2Q96SA4 455 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 TREM1Q9NP99 234 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 B4GALT7Q9UBV7 327 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 SPO11Q9Y5K1 396 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 IGLON5A6NGN9 336 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 IL7P13232 177 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 RABIFP47224 123 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 ZNF140P52738 457 aaPredicted RBP11.17□□□□□ -0.62
COL9A1-202ENST00000357250 SELENOVP59797 346 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 TDGQ13569 410 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 LETMD1Q6P1Q0 360 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 DPPA4Q7L190 304 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 PROKR1Q8TCW9 393 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 KIAA1143Q96AT1 154 aaPredicted RBP11.17□□□□□ -0.62
COL9A1-202ENST00000357250 PTERQ96BW5 349 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 SH3YL1Q96HL8 342 aaPredicted RBP11.17□□□□□ -0.62
COL9A1-202ENST00000357250 ZNF597Q96LX8 424 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 PINK1Q9BXM7 581 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 SLC17A9Q9BYT1 436 aa11.17□□□□□ -0.62
COL9A1-202ENST00000357250 ZSCAN5BA6NJL1 495 aa11.16□□□□□ -0.62
COL9A1-202ENST00000357250 K7ERQ8 282 aa11.16□□□□□ -0.62
COL9A1-202ENST00000357250 PRAMEF2O60811 474 aa11.16□□□□□ -0.62
COL9A1-202ENST00000357250 H2AFB2P0C5Z0 115 aa11.16□□□□□ -0.62
COL9A1-202ENST00000357250 GTF2F2P13984 249 aa11.16□□□□□ -0.62
COL9A1-202ENST00000357250 MAGEA12P43365 314 aa11.16□□□□□ -0.62
COL9A1-202ENST00000357250 CRYZQ08257 329 aaKnown RBP11.16□□□□□ -0.62
COL9A1-202ENST00000357250 SPIN3Q5JUX0 258 aa11.16□□□□□ -0.62
COL9A1-202ENST00000357250 FIGLAQ6QHK4 219 aa11.16□□□□□ -0.62
COL9A1-202ENST00000357250 CCBE1Q6UXH8 406 aaPredicted RBP11.16□□□□□ -0.62
COL9A1-202ENST00000357250 DTWD1Q8N5C7 304 aa11.16□□□□□ -0.62
COL9A1-202ENST00000357250 SLC5A8Q8N695 610 aa11.16□□□□□ -0.62
COL9A1-202ENST00000357250 ZNF471Q9BX82 626 aaPredicted RBP11.16□□□□□ -0.62
COL9A1-202ENST00000357250 ZNF700Q9H0M5 742 aa11.16□□□□□ -0.62
COL9A1-202ENST00000357250 ZFP57Q9NU63 452 aa11.16□□□□□ -0.62
COL9A1-202ENST00000357250 GPR34Q9UPC5 381 aa11.16□□□□□ -0.62
COL9A1-202ENST00000357250 PCDHGA3Q9Y5H0 932 aa11.16□□□□□ -0.62
COL9A1-202ENST00000357250 NPIPA2E9PIF3 369 aa11.16□□□□□ -0.62
COL9A1-202ENST00000357250 NPIPA3F8WFD2 350 aa11.16□□□□□ -0.62
COL9A1-202ENST00000357250 HSPA12AO43301 675 aa11.16□□□□□ -0.62
COL9A1-202ENST00000357250 ZNF217O75362 1048 aa11.16□□□□□ -0.62
COL9A1-202ENST00000357250 ITGB7P26010 798 aa11.16□□□□□ -0.62
COL9A1-202ENST00000357250 CD70P32970 193 aa11.16□□□□□ -0.62
COL9A1-202ENST00000357250 PRPS1P60891 318 aa11.16□□□□□ -0.62
COL9A1-202ENST00000357250 S100A10P60903 97 aa11.16□□□□□ -0.62
COL9A1-202ENST00000357250 HNRNPKP61978 463 aaKnown RBP eCLIP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms