RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 KLHL35Q6PF15 583 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 IYDQ6PHW0 289 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 R3HCC1LQ7Z5L2 792 aaKnown RBP6.54□□□□□ -1.36
VPS13A-201ENST00000355766 AMIGO1Q86WK6 493 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 RIMKLAQ8IXN7 391 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 METTL4Q8N3J2 472 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 RBMXL3Q8N7X1 1067 aaKnown RBP6.54□□□□□ -1.36
VPS13A-201ENST00000355766 SRFBP1Q8NEF9 429 aaKnown RBP6.54□□□□□ -1.36
VPS13A-201ENST00000355766 VPS37AQ8NEZ2 397 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 OR52E4Q8NGH9 312 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 OR52E1Q8NGJ3 308 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 OR9I1Q8NGQ6 314 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 OR2A1Q8NGT9 310 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 CHTF18Q8WVB6 975 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 NCSTNQ92542 709 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 RSC1A1Q92681 617 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 SH3KBP1Q96B97 665 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 LRRC58Q96CX6 371 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 CCDC115Q96NT0 180 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 NUDT9Q9BW91 350 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 SPATA9Q9BWV2 254 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 DPY30Q9C005 99 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 ROGDIQ9GZN7 287 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 CHRNA10Q9GZZ6 450 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 EPB41L1Q9H4G0 881 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 MYNNQ9NPC7 610 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 ACTR10Q9NZ32 417 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 STX18Q9P2W9 335 aaKnown RBP6.54□□□□□ -1.36
VPS13A-201ENST00000355766 TBC1D29Q9UFV1 150 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 TAC3Q9UHF0 121 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 SNX7Q9UNH6 387 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 ICKQ9UPZ9 632 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 CORO2BQ9UQ03 480 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 POMPQ9Y244 141 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 KCNK6Q9Y257 313 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 WDR37Q9Y2I8 494 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 ESPL1Q14674 2120 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 ABCA2Q9BZC7 2435 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 A0A096LPI6 279 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 TCRBV5S2A0A599 114 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 C9orf118A6NHY6 69 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 LILRA5A6NI73 299 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 AQP12BA6NM10 295 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 MAGEB17A8MXT2 336 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 H7BY64 318 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 SUSD5O60279 629 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 SCELO95171 688 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 C9P02748 559 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 ZCCHC18P0CG32 403 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 CDH1P12830 882 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 PPIBP23284 216 aaKnown RBP6.53□□□□□ -1.36
VPS13A-201ENST00000355766 SLC6A2P23975 617 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 PTGER4P35408 488 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 GFERP55789 205 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 UFM1P61960 85 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 RPS15AP62244 130 aaKnown RBP6.53□□□□□ -1.36
VPS13A-201ENST00000355766 RPS18P62269 152 aaKnown RBP6.53□□□□□ -1.36
VPS13A-201ENST00000355766 AP2B1P63010 937 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 HMGCS1Q01581 520 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 TGM3Q08188 693 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 IL10RAQ13651 578 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 PDE7AQ13946 482 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 NFYCQ13952 458 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 TRIM25Q14258 630 aaKnown RBP6.53□□□□□ -1.36
VPS13A-201ENST00000355766 IL11RAQ14626 422 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 PTGR1Q14914 329 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 MAPKAPK3Q16644 382 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 SLC5A12Q1EHB4 618 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 ADPRMQ3LIE5 342 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 VPS26BQ4G0F5 336 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 TIGD2Q4W5G0 525 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 ANXA8L1Q5VT79 327 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 KHDRBS2Q5VWX1 349 aaKnown RBP6.53□□□□□ -1.36
VPS13A-201ENST00000355766 SP5Q6BEB4 398 aaPredicted RBP6.53□□□□□ -1.36
VPS13A-201ENST00000355766 ZNF425Q6IV72 752 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 NIPAL1Q6NVV3 410 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 SPNS3Q6ZMD2 512 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 DHDDSQ86SQ9 333 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 SLC9B2Q86UD5 537 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 NUDT13Q86X67 352 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 TRIM48Q8IWZ4 208 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 AQP12AQ8IXF9 295 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 LIX1Q8N485 282 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 LINC01555Q8NAE3 123 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 TRPV3Q8NET8 790 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 OR2L3Q8NG85 312 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.53□□□□□ -1.36
VPS13A-201ENST00000355766 LCN9Q8WX39 176 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 ZUFSPQ96AP4 578 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 DUS3LQ96G46 650 aaKnown RBP6.53□□□□□ -1.36
VPS13A-201ENST00000355766 ITCHQ96J02 903 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 MARK4Q96L34 752 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 CCDC140Q96MF4 163 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 OR6C1Q96RD1 312 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 C1orf50Q9BV19 199 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 MS4A8Q9BY19 250 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 LDHAL6BQ9BYZ2 381 aaPredicted RBP6.53□□□□□ -1.36
VPS13A-201ENST00000355766 LHX9Q9NQ69 397 aa6.53□□□□□ -1.36
VPS13A-201ENST00000355766 FARSBQ9NSD9 589 aaKnown RBP6.53□□□□□ -1.36
VPS13A-201ENST00000355766 EHD3Q9NZN3 535 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms