RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 MID2Q9UJV3 735 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 ZNF223Q9UK11 482 aaPredicted RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 MRPS2Q9Y399 296 aaKnown RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 IKBKGQ9Y6K9 419 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 TRIOBPQ9H2D6 2365 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 PTPRZ1P23471 2315 aaPredicted RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 A0A1W2PQ67 120 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 DYTNA2CJ06 578 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 OR2A25A4D2G3 310 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 MAGEA13PA6NCF6 341 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 OR2AG2A6NM03 316 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 H3BSA7 217 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 J3KTA2 159 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 NR5A2O00482 541 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 CYR61O00622 381 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 DSCR3O14972 297 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 INPP4BO15327 924 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 MID1O15344 667 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 STX7O15400 261 aaKnown RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 PRKRAO75569 313 aaKnown RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 FTH1P19P0C7X4 201 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 OR12D1P0DN82 309 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 UMPSP11172 480 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 ZNF7P17097 686 aaPredicted RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 EFNA1P20827 205 aaPredicted RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 TBXA2RP21731 343 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 NTSR1P30989 418 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 CTNNB1P35222 781 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 ALDH3A2P51648 485 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 ZNF136P52737 540 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 CDH15P55291 814 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 RAP2BP61225 183 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 PPP1CAP62136 330 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 AP2B1P63010 937 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 TUBA4AP68366 448 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 RELAQ04206 551 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 OCA2Q04671 838 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 RUNX3Q13761 415 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 FLOT2Q14254 428 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 DUSP7Q16829 419 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 TIGD6Q17RP2 521 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 AARS2Q5JTZ9 985 aaKnown RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 LDLRAP1Q5SW96 308 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 RNLSQ5VYX0 342 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 ZNF529Q6P280 563 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 IL27RAQ6UWB1 636 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 ABRAXAS1Q6UWZ7 409 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 TMPRSS9Q7Z410 1059 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 COMMD6Q7Z4G1 85 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 SPARTQ8N0X7 666 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 NAGSQ8N159 534 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 CBR4Q8N4T8 237 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 FAM47BQ8NA70 645 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 TBC1D15Q8TC07 691 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 WFIKKN2Q8TEU8 576 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 NELL1Q92832 810 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 MAL2Q969L2 176 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 TBRG4Q969Z0 631 aaKnown RBP eCLIP2.16□□□□□ -2.06
VPS54-202ENST00000354504 RMDN1Q96DB5 314 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 MS4A6EQ96DS6 147 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 NEURL3Q96EH8 262 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 CENPNQ96H22 339 aaPredicted RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 OR2A5Q96R48 311 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 NIPSNAP1Q9BPW8 284 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 SOSTQ9BQB4 213 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 REXO4Q9GZR2 422 aaKnown RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 TCEAL2Q9H3H9 227 aaPredicted RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 FAM83DQ9H4H8 585 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 KIR3DX1Q9H7L2 352 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 A4GALTQ9NPC4 353 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 TEX10Q9NXF1 929 aaPredicted RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 TBC1D14Q9P2M4 693 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 LPAR3Q9UBY5 353 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 TRMT6Q9UJA5 497 aaKnown RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 A0A1W2PPL8 197 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 DHRS12A0PJE2 317 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 UBE2QL1A1L167 161 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 IGLON5A6NGN9 336 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 ZNF785A8K8V0 405 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 C2CD4DB7Z1M9 353 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 BTN3A3O00478 584 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 HAT1O14929 419 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 GPR42O15529 346 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 SEC14L5O43304 696 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 HNRNPRO43390 633 aaKnown RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 PROM1O43490 865 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 VEGFDO43915 354 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 NDUFS3O75489 264 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 H6PDO95479 791 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 NGFRP08138 427 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 GUSBP08236 651 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 ELANEP08246 267 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 UBTFL6P0CB48 400 aaPredicted RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 CHRNB1P11230 501 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 GABRG2P18507 467 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 SLC2A5P22732 501 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 TIA1P31483 386 aaKnown RBP eCLIP2.16□□□□□ -2.063e-6■■■□□ 18.3
VPS54-202ENST00000354504 DLX5P56178 289 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 NRG3P56975 720 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 KIAA1024LP59773 190 aa2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms