RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 THOC6Q86W42 341 aaKnown RBP6.42□□□□□ -1.38
VPS39-202ENST00000348544 MMP21Q8N119 569 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 DBF4BQ8NFT6 615 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 OR5M3Q8NGP4 307 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 LILRB1Q8NHL6 650 aaPredicted RBP6.42□□□□□ -1.38
VPS39-202ENST00000348544 GTF3C2Q8WUA4 911 aaPredicted RBP6.42□□□□□ -1.38
VPS39-202ENST00000348544 ST8SIA2Q92186 375 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 FOXJ1Q92949 421 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 PTP4A1Q93096 173 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 WBP2Q969T9 261 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 OTUB1Q96FW1 271 aaPredicted RBP6.42□□□□□ -1.38
VPS39-202ENST00000348544 HIST1H2AHQ96KK5 128 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 CXorf58Q96LI9 332 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 COQ10AQ96MF6 247 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 OR4K3Q96R72 315 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 HIST1H2AJQ99878 128 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 ZNF649Q9BS31 505 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 H2AFJQ9BTM1 129 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 NLNQ9BYT8 704 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 OSGEPL1Q9H4B0 414 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 REEP4Q9H6H4 257 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 SYNDIG1Q9H7V2 258 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 SGK2Q9HBY8 427 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 TMEM161AQ9NX61 479 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 NLGN3Q9NZ94 848 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 CLCA2Q9UQC9 943 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 TRPV2Q9Y5S1 764 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 CSNK1G3Q9Y6M4 447 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP6.41□□□□□ -1.38
VPS39-202ENST00000348544 H0YIV9 168 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 M0R233 179 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 UGDHO60701 494 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 GPR37L1O60883 481 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 RGS11O94810 467 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 GJB5O95377 273 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 VNN2O95498 520 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 HPXP02790 462 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 BCHEP06276 602 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 EPHX1P07099 455 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 FURINP09958 794 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 GAAP10253 952 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 GIFP27352 417 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 CD52P31358 61 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 THBS2P35442 1172 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 SOAT1P35610 550 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 SPAM1P38567 509 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 SLC1A3P43003 542 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 SLC6A11P48066 632 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 DGKGP49619 791 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 DSTNP60981 165 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 RPS13P62277 151 aaKnown RBP6.41□□□□□ -1.38
VPS39-202ENST00000348544 CDK5Q00535 292 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 TAP2Q03519 686 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 LRRC74AQ0VAA2 488 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 ZNF177Q13360 481 aaPredicted RBP6.41□□□□□ -1.38
VPS39-202ENST00000348544 PIN1Q13526 163 aaPredicted RBP6.41□□□□□ -1.38
VPS39-202ENST00000348544 PDE7AQ13946 482 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 GRM7Q14831 915 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 ZNF791Q3KP31 576 aaPredicted RBP6.41□□□□□ -1.38
VPS39-202ENST00000348544 GPR33Q49SQ1 333 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 LYPLAL1Q5VWZ2 237 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 ASTLQ6HA08 431 aaPredicted RBP6.41□□□□□ -1.38
VPS39-202ENST00000348544 GRHL2Q6ISB3 625 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 REEP3Q6NUK4 255 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 PODNL1Q6PEZ8 512 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 SEZ6L2Q6UXD5 910 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 OVCH2Q7RTZ1 564 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 GPR142Q7Z601 462 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 ZNF280BQ86YH2 543 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 STPG2Q8N412 459 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 FTMTQ8N4E7 242 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 OR2T35Q8NGX2 323 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 SLC38A5Q8WUX1 472 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 GIMAP1Q8WWP7 306 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 DACT3Q96B18 629 aaPredicted RBP6.41□□□□□ -1.38
VPS39-202ENST00000348544 OTULINQ96BN8 352 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 SGTBQ96EQ0 304 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 DPAGT1Q9H3H5 408 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 IFT46Q9NQC8 304 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 ZNF624Q9P2J8 865 aaPredicted RBP6.41□□□□□ -1.38
VPS39-202ENST00000348544 KIF25Q9UIL4 384 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 ADAM30Q9UKF2 790 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 ACAD8Q9UKU7 415 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 NUBP2Q9Y5Y2 271 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 NPTNQ9Y639 398 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 A0A1B0GVI7 797 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 LGALS8O00214 317 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 CASC3O15234 703 aaKnown RBP6.41□□□□□ -1.38
VPS39-202ENST00000348544 PRODHO43272 600 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 NME6O75414 186 aaPredicted RBP6.41□□□□□ -1.38
VPS39-202ENST00000348544 HLA-DPB1P04440 258 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 PROS1P07225 676 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 ZDHHC11BP0C7U3 371 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 DRD2P14416 443 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 CCND3P30281 292 aaPredicted RBP6.41□□□□□ -1.38
VPS39-202ENST00000348544 MTNR1AP48039 350 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 RFX3P48380 749 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 ZNF33BQ06732 778 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 GRB14Q14449 540 aa6.41□□□□□ -1.38
VPS39-202ENST00000348544 CCSMST1Q4G0I0 132 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms