RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 MLLT1Q03111 559 aaPredicted RBP21.12■□□□□ 0.97
TRIM28-202ENST00000341753 CSTF1Q05048 431 aaKnown RBP21.12■□□□□ 0.97
TRIM28-202ENST00000341753 C3orf38Q5JPI3 329 aa21.12■□□□□ 0.97
TRIM28-202ENST00000341753 CREB3L2Q70SY1 520 aa21.12■□□□□ 0.97
TRIM28-202ENST00000341753 KIF18BQ86Y91 864 aa21.12■□□□□ 0.97
TRIM28-202ENST00000341753 PCNPQ8WW12 178 aaKnown RBP21.12■□□□□ 0.97
TRIM28-202ENST00000341753 SOSTQ9BQB4 213 aa21.12■□□□□ 0.97
TRIM28-202ENST00000341753 FNDC11Q9BVV2 318 aa21.12■□□□□ 0.97
TRIM28-202ENST00000341753 GTPBP2Q9BX10 602 aaKnown RBP21.12■□□□□ 0.97
TRIM28-202ENST00000341753 TBX21Q9UL17 535 aa21.12■□□□□ 0.97
TRIM28-202ENST00000341753 PLAGL1Q9UM63 463 aa21.12■□□□□ 0.97
TRIM28-202ENST00000341753 SLC5A10A0PJK1 596 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 STK25O00506 426 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 FABP7O15540 132 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 ATG13O75143 517 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 C1orf105O95561 183 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 HLA-DQB1P01920 261 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 LIMS3P0CW19 117 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 LIMS4P0CW20 117 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 CELP19835 753 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 PKLRP30613 574 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 DBPQ10586 325 aaPredicted RBP21.11■□□□□ 0.97
TRIM28-202ENST00000341753 TPBGQ13641 420 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 ADGRF3Q8IZF5 1079 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 NATD1Q8N6N6 113 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 OR4M2Q8NGB6 313 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 OR4F15Q8NGB8 312 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 EXOSC8Q96B26 276 aaKnown RBP21.11■□□□□ 0.97
TRIM28-202ENST00000341753 MARVELD1Q9BSK0 173 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 PRAMEF27A3QJZ7 478 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 FOXE1O00358 373 aaPredicted RBP21.11■□□□□ 0.97
TRIM28-202ENST00000341753 FGF18O76093 207 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 POP4O95707 220 aaKnown RBP21.11■□□□□ 0.97
TRIM28-202ENST00000341753 GABRA5P31644 462 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 RPL3P39023 403 aaKnown RBP21.11■□□□□ 0.97
TRIM28-202ENST00000341753 SLC6A11P48066 632 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 RAB8AP61006 207 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 ZNF791Q3KP31 576 aaPredicted RBP21.11■□□□□ 0.97
TRIM28-202ENST00000341753 ZDHHC20Q5W0Z9 365 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 IL20RBQ6UXL0 311 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 ZNF767PQ75MW2 155 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 CFAP206Q8IYR0 622 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 XAGE5Q8WWM1 108 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 NEURL3Q96EH8 262 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 ZC3HAV1LQ96H79 300 aaKnown RBP21.11■□□□□ 0.97
TRIM28-202ENST00000341753 TREX2Q9BQ50 279 aaPredicted RBP21.11■□□□□ 0.97
TRIM28-202ENST00000341753 FUZQ9BT04 418 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 SERHL2Q9H4I8 314 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 A4GALTQ9NPC4 353 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 HCFC2Q9Y5Z7 792 aa21.11■□□□□ 0.97
TRIM28-202ENST00000341753 LANCL1O43813 399 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 PAHP00439 452 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 ZNF30P17039 623 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 ZNF284Q2VY69 593 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 KLHL22Q53GT1 634 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 HIST2H2AA3Q6FI13 130 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 GDPD4Q6W3E5 623 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 C9orf62Q8N4C0 152 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 ZNF366Q8N895 744 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 NEIL3Q8TAT5 605 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 AKAP1Q92667 903 aaKnown RBP eCLIP21.1■□□□□ 0.97
TRIM28-202ENST00000341753 CCDC120Q96HB5 630 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 SPEF1Q9Y4P9 236 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 PCDHGB7Q9Y5F8 929 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 LILRB3O75022 631 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 SOD1P00441 154 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 CTSAP10619 480 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 ACP2P11117 423 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 LAG3P18627 525 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 MTNR1AP48039 350 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 COL9A2Q14055 689 aaPredicted RBP21.1■□□□□ 0.97
TRIM28-202ENST00000341753 FCN2Q15485 313 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 TOR2AQ5JU69 321 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 ANKRD54Q6NXT1 300 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 C7orf57Q8NEG2 295 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 CYB5D2Q8WUJ1 264 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 DHRS9Q9BPW9 319 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 EFCAB11Q9BUY7 163 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 SLC28A3Q9HAS3 691 aa21.1■□□□□ 0.97
TRIM28-202ENST00000341753 HRO43593 1189 aa21.09■□□□□ 0.97
TRIM28-202ENST00000341753 AKAP8O43823 692 aaKnown RBP21.09■□□□□ 0.97
TRIM28-202ENST00000341753 SLC7A9P82251 487 aa21.09■□□□□ 0.97
TRIM28-202ENST00000341753 TMEM115Q12893 351 aaPredicted RBP21.09■□□□□ 0.97
TRIM28-202ENST00000341753 ESCO2Q56NI9 601 aa21.09■□□□□ 0.97
TRIM28-202ENST00000341753 SLC5A11Q8WWX8 675 aa21.09■□□□□ 0.97
TRIM28-202ENST00000341753 MAN2C1Q9NTJ4 1040 aa21.09■□□□□ 0.97
TRIM28-202ENST00000341753 TRPC4Q9UBN4 977 aa21.09■□□□□ 0.97
TRIM28-202ENST00000341753 CDH10Q9Y6N8 788 aa21.09■□□□□ 0.97
TRIM28-202ENST00000341753 RANBP2P49792 3224 aaKnown RBP21.09■□□□□ 0.97
TRIM28-202ENST00000341753 SLC43A1O75387 559 aa21.09■□□□□ 0.97
TRIM28-202ENST00000341753 BCL2L15Q5TBC7 163 aa21.09■□□□□ 0.97
TRIM28-202ENST00000341753 WASH2PQ6VEQ5 465 aa21.09■□□□□ 0.97
TRIM28-202ENST00000341753 OR6T1Q8NGN1 323 aa21.09■□□□□ 0.97
TRIM28-202ENST00000341753 LMLNQ96KR4 655 aa21.09■□□□□ 0.97
TRIM28-202ENST00000341753 YIPF4Q9BSR8 244 aa21.09■□□□□ 0.97
TRIM28-202ENST00000341753 RNF32Q9H0A6 362 aa21.09■□□□□ 0.97
TRIM28-202ENST00000341753 PPIL3Q9H2H8 161 aaKnown RBP21.09■□□□□ 0.97
TRIM28-202ENST00000341753 CXCL14O95715 111 aa21.08■□□□□ 0.97
TRIM28-202ENST00000341753 PTNP21246 168 aa21.08■□□□□ 0.97
TRIM28-202ENST00000341753 SF3A2Q15428 464 aaKnown RBP21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms