RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 TLE1Q04724 770 aa14.68□□□□□ -0.06
CCDC28A-201ENST00000332797 MAPKAPK3Q16644 382 aa14.68□□□□□ -0.06
CCDC28A-201ENST00000332797 OR4F3Q6IEY1 312 aa14.68□□□□□ -0.06
CCDC28A-201ENST00000332797 SLC25A25Q6KCM7 469 aa14.68□□□□□ -0.06
CCDC28A-201ENST00000332797 TMEM64Q6YI46 380 aa14.68□□□□□ -0.06
CCDC28A-201ENST00000332797 MDGA2Q7Z553 956 aa14.68□□□□□ -0.06
CCDC28A-201ENST00000332797 CAMKMTQ7Z624 323 aa14.68□□□□□ -0.06
CCDC28A-201ENST00000332797 ZNF605Q86T29 641 aa14.68□□□□□ -0.06
CCDC28A-201ENST00000332797 PRR22Q8IZ63 422 aa14.68□□□□□ -0.06
CCDC28A-201ENST00000332797 OR2L13Q8N349 312 aa14.68□□□□□ -0.06
CCDC28A-201ENST00000332797 CISD2Q8N5K1 135 aaKnown RBP14.68□□□□□ -0.06
CCDC28A-201ENST00000332797 SLC15A4Q8N697 577 aa14.68□□□□□ -0.06
CCDC28A-201ENST00000332797 NATD1Q8N6N6 113 aa14.68□□□□□ -0.06
CCDC28A-201ENST00000332797 TMEM178AQ8NBL3 297 aa14.68□□□□□ -0.06
CCDC28A-201ENST00000332797 C17orf47Q8NEP4 570 aa14.68□□□□□ -0.06
CCDC28A-201ENST00000332797 TESCQ96BS2 214 aa14.68□□□□□ -0.06
CCDC28A-201ENST00000332797 SCMH1Q96GD3 660 aa14.68□□□□□ -0.06
CCDC28A-201ENST00000332797 LCORQ96JN0 433 aaPredicted RBP14.68□□□□□ -0.06
CCDC28A-201ENST00000332797 FOLH1BQ9HBA9 442 aa14.68□□□□□ -0.06
CCDC28A-201ENST00000332797 NPHS2Q9NP85 383 aa14.68□□□□□ -0.06
CCDC28A-201ENST00000332797 C9JVG2 144 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 CFLARO15519 480 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 NME2P1O60361 137 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 C6orf47O95873 294 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 ABCB1P08183 1280 aaPredicted RBP14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 IFI6P09912 130 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 NME2P22392 152 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 MDH1P40925 334 aaKnown RBP14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 KIR3DL1P43629 444 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 PPICP45877 212 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 DCAF7P61962 342 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 SRSF11Q05519 484 aaKnown RBP14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 MLC1Q15049 377 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 INPP5JQ15735 1006 aaPredicted RBP14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 GSTA3Q16772 222 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 PDCD4Q53EL6 469 aaKnown RBP14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 RPUSD3Q6P087 351 aaKnown RBP14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 LYPD8Q6UX82 237 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 RTL4Q6ZR62 310 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 GALNTL5Q7Z4T8 443 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 RFWD2Q8NHY2 731 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 CPT1CQ8TCG5 803 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 OR5P2Q8WZ92 322 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 SPACA9Q96E40 222 aaPredicted RBP14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 TEX37Q96LM6 180 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 VSTM2LQ96N03 204 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 ZBTB18Q99592 522 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 CCDC28BQ9BUN5 200 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 TRIM4Q9C037 500 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 CLMPQ9H6B4 373 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 TIMMDC1Q9NPL8 285 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 DCTN4Q9UJW0 460 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 PCDHGB6Q9Y5F9 930 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 SNX8Q9Y5X2 465 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 COPG1Q9Y678 874 aaKnown RBP14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 CNTRLQ7Z7A1 2325 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 ZNF462Q96JM2 2506 aa14.67□□□□□ -0.06
CCDC28A-201ENST00000332797 PRRC2CQ9Y520 2896 aaKnown RBP14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 FRG2CA6NGY1 282 aa14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 EMC8O43402 210 aa14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 ERN1O75460 977 aaKnown RBP14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 PSMG1O95456 288 aa14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 VIMP08670 466 aaKnown RBP14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 FBXO45P0C2W1 286 aa14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 PRKAG1P54619 331 aa14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 CORO7P57737 925 aa14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 PMP22Q01453 160 aa14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 INAQ16352 499 aa14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 DPY19L1Q2PZI1 675 aa14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 ZNF791Q3KP31 576 aaPredicted RBP14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 FAM174BQ3ZCQ3 159 aa14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 SPANXN4Q5MJ08 99 aa14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 PSD4Q8NDX1 1056 aa14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 FAM13CQ8NE31 585 aa14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 NUP43Q8NFH3 380 aa14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 OR8J2Q8NGG1 315 aa14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 OR5M3Q8NGP4 307 aa14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 SNRNP40Q96DI7 357 aaKnown RBP14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 HSPBAP1Q96EW2 488 aa14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 BTBD9Q96Q07 612 aa14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 CCDC134Q9H6E4 229 aa14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 C3orf14Q9HBI5 128 aa14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 EQTNQ9NQ60 294 aa14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 SIRT3Q9NTG7 399 aaPredicted RBP14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 FGFR1OP2Q9NVK5 253 aa14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 NTNG1Q9Y2I2 539 aa14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 NPFFR2Q9Y5X5 522 aa14.66□□□□□ -0.06
CCDC28A-201ENST00000332797 ACOX3O15254 700 aa14.65□□□□□ -0.06
CCDC28A-201ENST00000332797 SLC22A3O75751 556 aa14.65□□□□□ -0.06
CCDC28A-201ENST00000332797 RASAL1O95294 804 aa14.65□□□□□ -0.06
CCDC28A-201ENST00000332797 DRD5P21918 477 aa14.65□□□□□ -0.06
CCDC28A-201ENST00000332797 ABCD3P28288 659 aa14.65□□□□□ -0.06
CCDC28A-201ENST00000332797 IL12AP29459 219 aa14.65□□□□□ -0.06
CCDC28A-201ENST00000332797 S100A3P33764 101 aa14.65□□□□□ -0.06
CCDC28A-201ENST00000332797 TMED10P49755 219 aaKnown RBP14.65□□□□□ -0.06
CCDC28A-201ENST00000332797 WNT3P56703 355 aa14.65□□□□□ -0.06
CCDC28A-201ENST00000332797 PLCXD2Q0VAA5 305 aa14.65□□□□□ -0.06
CCDC28A-201ENST00000332797 SPDYE7PQ495Y7 208 aa14.65□□□□□ -0.06
CCDC28A-201ENST00000332797 FAM180AQ6UWF9 173 aa14.65□□□□□ -0.06
CCDC28A-201ENST00000332797 NPSR1Q6W5P4 371 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms