RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 PPP2R1BP30154 601 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 ELK3P41970 407 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 PITPNBP48739 271 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 TKTL1P51854 596 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 LMO4P61968 165 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 ZFP36L1Q07352 338 aaKnown RBP2.66□□□□□ -1.98
HMGB1-201ENST00000326004 PCK2Q16822 640 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 HERC4Q5GLZ8 1057 aaPredicted RBP2.66□□□□□ -1.98
HMGB1-201ENST00000326004 WDR25Q64LD2 544 aaPredicted RBP2.66□□□□□ -1.98
HMGB1-201ENST00000326004 STEAP1BQ6NZ63 245 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 ARMCX5Q6P1M9 558 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 CWC27Q6UX04 472 aaKnown RBP2.66□□□□□ -1.98
HMGB1-201ENST00000326004 TIPARPQ7Z3E1 657 aaKnown RBP2.66□□□□□ -1.98
HMGB1-201ENST00000326004 MIER3Q7Z3K6 550 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 SLC22A16Q86VW1 577 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 TMEM185AQ8NFB2 350 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 URGCPQ8TCY9 931 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 U2AF1L4Q8WU68 220 aaKnown RBP2.66□□□□□ -1.98
HMGB1-201ENST00000326004 P3H4Q92791 437 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 ANKRD9Q96BM1 317 aaPredicted RBP2.66□□□□□ -1.98
HMGB1-201ENST00000326004 RBM18Q96H35 190 aaKnown RBP2.66□□□□□ -1.98
HMGB1-201ENST00000326004 COG3Q96JB2 828 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 FOXN4Q96NZ1 517 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 TSGA13Q96PP4 275 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 FTHL17Q9BXU8 183 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 DCTPP1Q9H773 170 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 ELL3Q9HB65 397 aaPredicted RBP2.66□□□□□ -1.98
HMGB1-201ENST00000326004 HOMER3Q9NSC5 361 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 ANO10Q9NW15 660 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 HPF1Q9NWY4 346 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 KCNN3Q9UGI6 736 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 BLOC1S6Q9UL45 172 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 MMP24Q9Y5R2 645 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 STYXL1Q9Y6J8 313 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 KIF14Q15058 1648 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 DISP1Q96F81 1524 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 FAM135AQ9P2D6 1515 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 MROH2AA6NES4 1674 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 ITSN2Q9NZM3 1697 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 KIF7Q2M1P5 1343 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 IQGAP2Q13576 1575 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 NRKQ7Z2Y5 1582 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 XIRP1Q702N8 1843 aaKnown RBP2.65□□□□□ -1.98
HMGB1-201ENST00000326004 TP53BP1Q12888 1972 aaPredicted RBP2.65□□□□□ -1.98
HMGB1-201ENST00000326004 DLC1Q96QB1 1528 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 TEX48A0A1B0GUV7 120 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 RPL37AP8A6NKH3 93 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 SH2D1BO14796 132 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 CPLX1O14810 134 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 SYNGR4O95473 234 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 HPP00738 406 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 RENP00797 406 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 CXCL10P02778 98 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 HSD17B1P14061 328 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 AHCYP23526 432 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 RPL34P49207 117 aaKnown RBP2.65□□□□□ -1.99
HMGB1-201ENST00000326004 NUMBP49757 651 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 RGS19P49795 217 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 TAF6P49848 677 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 CCL11P51671 97 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 SRP54P61011 504 aaKnown RBP2.65□□□□□ -1.99
HMGB1-201ENST00000326004 POLR2FP61218 127 aaKnown RBP2.65□□□□□ -1.99
HMGB1-201ENST00000326004 RPS4XP62701 263 aaKnown RBP2.65□□□□□ -1.99
HMGB1-201ENST00000326004 COX10Q12887 443 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 ITPK1Q13572 414 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 TMEM44Q2T9K0 475 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 ANKRD55Q3KP44 614 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 UNC50Q53HI1 259 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 GALNT17Q6IS24 598 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 ABRAXAS1Q6UWZ7 409 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 OLFM4Q6UX06 510 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 MOB2Q70IA6 237 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 CDC20BQ86Y33 519 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 CCDC71Q8IV32 467 aaPredicted RBP2.65□□□□□ -1.99
HMGB1-201ENST00000326004 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP2.65□□□□□ -1.99
HMGB1-201ENST00000326004 FLVCR1-AS1Q8TAF5 88 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 SLC13A3Q8WWT9 602 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 C1orf147Q96MC9 270 aaPredicted RBP2.65□□□□□ -1.99
HMGB1-201ENST00000326004 JPH2Q9BR39 696 aaPredicted RBP2.65□□□□□ -1.99
HMGB1-201ENST00000326004 ABCG8Q9H221 673 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 C1orf21Q9H246 121 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 PNNQ9H307 717 aaKnown RBP2.65□□□□□ -1.99
HMGB1-201ENST00000326004 HPS4Q9NQG7 708 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 COPS7AQ9UBW8 275 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 SEC14L4Q9UDX3 406 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 FAM153AQ9UHL3 310 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 ZNF346Q9UL40 294 aaKnown RBP2.65□□□□□ -1.99
HMGB1-201ENST00000326004 SLC6A5Q9Y345 797 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 STRAPQ9Y3F4 350 aaKnown RBP2.65□□□□□ -1.99
HMGB1-201ENST00000326004 ATP6V0A2Q9Y487 856 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 PLCH2O75038 1416 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 PTPRUQ92729 1446 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 FAM205AQ6ZU69 1335 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 ARHGAP23Q9P227 1491 aa2.65□□□□□ -1.99
HMGB1-201ENST00000326004 TNRQ92752 1358 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 NPC1L1Q9UHC9 1359 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 EP400Q96L91 3159 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 CLTCQ00610 1675 aaKnown RBP2.64□□□□□ -1.99
HMGB1-201ENST00000326004 A0A0A6YYD4 124 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 NPIPA5A0A0B4J1W7 369 aa2.64□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms