RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 UBFD1O14562 309 aaKnown RBP10.96□□□□□ -0.65
VPS39-201ENST00000318006 OSMP13725 252 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 HSD3B1P14060 373 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 GPX3P22352 226 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 HSD3B2P26439 372 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 FRKP42685 505 aaPredicted RBP10.96□□□□□ -0.65
VPS39-201ENST00000318006 GCGRP47871 477 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 ART1P52961 327 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 INHBCP55103 352 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 ZNF616Q08AN1 781 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 ZNF691Q5VV52 312 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 NRARPQ7Z6K4 114 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 TMEM185AQ8NFB2 350 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 GLYATL1Q969I3 302 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 AP1S3Q96PC3 154 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 GAL3ST4Q96RP7 486 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 ATG5Q9H1Y0 275 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 ACTR10Q9NZ32 417 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 ANKRD34BA5PLL1 514 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 TVP23AA6NH52 213 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 E7EQ34 232 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 F5H5P2 479 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 CD34P28906 385 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 CES4AQ5XG92 561 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 TMEM205Q6UW68 189 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 RAB11FIP2Q7L804 512 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 ISCA2Q86U28 154 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 CAMKVQ8NCB2 501 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 TRMT10AQ8TBZ6 339 aaKnown RBP10.96□□□□□ -0.66
VPS39-201ENST00000318006 SLC25A36Q96CQ1 311 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 EPYCQ99645 322 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 SLC6A7Q99884 636 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 OLAHQ9NV23 265 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 UGT2A1Q9Y4X1 527 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 XIRP1Q702N8 1843 aaKnown RBP10.96□□□□□ -0.66
VPS39-201ENST00000318006 GOSR2O14653 212 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 PROS1P07225 676 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 HNRNPA1P09651 372 aaKnown RBP eCLIP10.96□□□□□ -0.66
VPS39-201ENST00000318006 HOXB2P14652 356 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 IL4RP24394 825 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 CXCR1P25024 350 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 SSTR4P31391 388 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 GGT2P36268 569 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 GLP1RP43220 463 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 POU4F2Q12837 409 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 RAB33AQ14088 237 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 OR4D1Q15615 310 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 ESCO2Q56NI9 601 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 SUSD1Q6UWL2 747 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 CHRDL2Q6WN34 429 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 ABHD13Q7L211 337 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 TRAM1L1Q8N609 369 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 OR52B6Q8NGF0 335 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 OR56A3Q8NH54 315 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 FKBP10Q96AY3 582 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 CPNE2Q96FN4 548 aaPredicted RBP10.96□□□□□ -0.66
VPS39-201ENST00000318006 MFFQ9GZY8 342 aa10.96□□□□□ -0.66
VPS39-201ENST00000318006 H3BSH0 61 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 H7C417 338 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 SLC33A1O00400 549 aaPredicted RBP10.95□□□□□ -0.66
VPS39-201ENST00000318006 SLC16A5O15375 505 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 CSTBP04080 98 aaKnown RBP10.95□□□□□ -0.66
VPS39-201ENST00000318006 CERS1P27544 350 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 TIA1P31483 386 aaKnown RBP eCLIP10.95□□□□□ -0.66
VPS39-201ENST00000318006 ACTA2P62736 377 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 ACTG2P63267 376 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 TAGLNQ01995 201 aaKnown RBP10.95□□□□□ -0.66
VPS39-201ENST00000318006 UBXN2BQ14CS0 331 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 RAB41Q5JT25 222 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 GSG1LQ6UXU4 331 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 TMEM102Q8N9M5 508 aaPredicted RBP10.95□□□□□ -0.66
VPS39-201ENST00000318006 TSTD1Q8NFU3 115 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 SGTBQ96EQ0 304 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 TXNDC15Q96J42 360 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 THAP7Q9BT49 309 aaPredicted RBP10.95□□□□□ -0.66
VPS39-201ENST00000318006 PRMT8Q9NR22 394 aaPredicted RBP10.95□□□□□ -0.66
VPS39-201ENST00000318006 SLCO3A1Q9UIG8 710 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 TRBV2A0A0J9YWF9 115 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 WASH3PC4AMC7 463 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 EEF1E1-BLOC1S5C9J1V9 151 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 KRBOX1C9JBD0 128 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 K7ERQ8 282 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 TSPAN6O43657 245 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 GMDSO60547 372 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 ARHGEF15O94989 841 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 MPC1LP0DKB6 136 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 PCSK6P29122 969 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 MAGEA6P43360 314 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 RAB30Q15771 203 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 MICAQ29983 383 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 MPP7Q5T2T1 576 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 ERN2Q76MJ5 926 aaKnown RBP10.95□□□□□ -0.66
VPS39-201ENST00000318006 ARL14Q8N4G2 192 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 ADAMTS16Q8TE57 1224 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 TESCQ96BS2 214 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 DCAF13Q9NV06 445 aaKnown RBP10.95□□□□□ -0.66
VPS39-201ENST00000318006 ENPP4Q9Y6X5 453 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 NHSQ6T4R5 1651 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 FHP07954 510 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 HSD11B1P28845 292 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 123.8 ms