RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 WASH4PA8MWX3 477 aa12.23□□□□□ -0.45
COL3A1-201ENST00000304636 INPPL1O15357 1258 aa12.23□□□□□ -0.45
COL3A1-201ENST00000304636 C21orf33P30042 268 aaPredicted RBP12.23□□□□□ -0.45
COL3A1-201ENST00000304636 GDI2P50395 445 aaKnown RBP12.23□□□□□ -0.45
COL3A1-201ENST00000304636 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.23□□□□□ -0.45
COL3A1-201ENST00000304636 PPP2R2DQ66LE6 453 aa12.23□□□□□ -0.45
COL3A1-201ENST00000304636 OR4C11Q6IEV9 310 aa12.23□□□□□ -0.45
COL3A1-201ENST00000304636 RETREG3Q86VR2 466 aa12.23□□□□□ -0.45
COL3A1-201ENST00000304636 CCDC54Q8NEL0 328 aa12.23□□□□□ -0.45
COL3A1-201ENST00000304636 AUTS2Q8WXX7 1259 aa12.23□□□□□ -0.45
COL3A1-201ENST00000304636 C7orf50Q9BRJ6 194 aaKnown RBP12.23□□□□□ -0.45
COL3A1-201ENST00000304636 TEX10Q9NXF1 929 aaPredicted RBP12.23□□□□□ -0.45
COL3A1-201ENST00000304636 STC2O76061 302 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 AK1P00568 194 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 ACTBP60709 375 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 ACTG1P63261 375 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 GK2Q14410 553 aaPredicted RBP12.22□□□□□ -0.45
COL3A1-201ENST00000304636 WASH2PQ6VEQ5 465 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 OTOP2Q7RTS6 562 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 HMGN2P46Q86SG4 172 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 ZNF280BQ86YH2 543 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 LRRC25Q8N386 305 aaPredicted RBP12.22□□□□□ -0.45
COL3A1-201ENST00000304636 TMEM130Q8N3G9 435 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 GTF2H4Q92759 462 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 SCN11AQ9UI33 1791 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 A0A0G2JMP0 313 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 WASH3PC4AMC7 463 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 VEGFDO43915 354 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 SEC14L2O76054 403 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 GABRA3P34903 492 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 DPP6P42658 865 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 CDNFQ49AH0 187 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 FAM109AQ8N4B1 249 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 OR4M2Q8NGB6 313 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 GAL3ST3Q96A11 431 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 ELMOD3Q96FG2 381 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 THSD1Q9NS62 852 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 RNF13O43567 381 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 ADH6P28332 368 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 PRKCZQ05513 592 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 LRIT3Q3SXY7 679 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 FAM69AQ5T7M9 428 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 RASGEF1AQ8N9B8 481 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 METTL2AQ96IZ6 378 aaKnown RBP12.22□□□□□ -0.45
COL3A1-201ENST00000304636 TEPSINQ96N21 525 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 CCDC88AQ3V6T2 1871 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 ARPC4-TTLL3A0A0A6YYG9 625 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 ZNF840PA6NDX5 716 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 A8MUA0 341 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 SPARCP09486 303 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 IQCF3P0C7M6 154 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 SSTR4P31391 388 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 EVI2BP34910 448 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 MLLT11Q13015 90 aaPredicted RBP12.22□□□□□ -0.45
COL3A1-201ENST00000304636 PNPLA1Q8N8W4 532 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 ZNF565Q8N9K5 539 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 SGTBQ96EQ0 304 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 SLC6A7Q99884 636 aa12.22□□□□□ -0.45
COL3A1-201ENST00000304636 JUNBP17275 347 aaPredicted RBP12.21□□□□□ -0.45
COL3A1-201ENST00000304636 TAP2Q03519 686 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 TMEM173Q86WV6 379 aaPredicted RBP12.21□□□□□ -0.45
COL3A1-201ENST00000304636 NRMQ8IXM6 262 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 ZDHHC1Q8WTX9 485 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 SCLYQ96I15 445 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 RBP7Q96R05 134 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 ACPTQ9BZG2 426 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 KCNIP3Q9Y2W7 256 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 SPINT3P49223 89 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 STK19P49842 368 aaPredicted RBP12.21□□□□□ -0.45
COL3A1-201ENST00000304636 ID2Q02363 134 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 SPIN3Q5JUX0 258 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 WDR53Q7Z5U6 358 aaPredicted RBP12.21□□□□□ -0.45
COL3A1-201ENST00000304636 ARHGAP12Q8IWW6 846 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 NECAB3Q96P71 396 aaPredicted RBP12.21□□□□□ -0.45
COL3A1-201ENST00000304636 ALG8Q9BVK2 526 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 OR2S2Q9NQN1 319 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 IL17CQ9P0M4 197 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 WNT6Q9Y6F9 365 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 UNCXA6NJT0 531 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 PTGESO14684 152 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 MSL3P1P0C860 447 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 CD34P28906 385 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 MLLT3P42568 568 aaPredicted RBP12.21□□□□□ -0.45
COL3A1-201ENST00000304636 CDKN2CP42773 168 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 EIF2S3LQ2VIR3 472 aaKnown RBP12.21□□□□□ -0.45
COL3A1-201ENST00000304636 ASPGQ86U10 573 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 GALNT11Q8NCW6 608 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 WDR20Q8TBZ3 569 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 SLC41A3Q96GZ6 507 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 ZNF559Q9BR84 538 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 PPA2Q9H2U2 334 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 VNN3Q9NY84 501 aa12.21□□□□□ -0.45
COL3A1-201ENST00000304636 GOSR2O14653 212 aa12.21□□□□□ -0.46
COL3A1-201ENST00000304636 SOD2P04179 222 aa12.21□□□□□ -0.46
COL3A1-201ENST00000304636 SFTPBP07988 381 aa12.21□□□□□ -0.46
COL3A1-201ENST00000304636 PFKLP17858 780 aa12.21□□□□□ -0.46
COL3A1-201ENST00000304636 ZNF140P52738 457 aaPredicted RBP12.21□□□□□ -0.46
COL3A1-201ENST00000304636 CRYZQ08257 329 aaKnown RBP12.21□□□□□ -0.46
COL3A1-201ENST00000304636 TATDN3Q17R31 274 aa12.21□□□□□ -0.46
COL3A1-201ENST00000304636 RPS26P11Q5JNZ5 115 aaPredicted RBP12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms