RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 RLN3Q8WXF3 142 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 TREM1Q9NP99 234 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 MBLAC1A4D2B0 266 aaPredicted RBP16.43■□□□□ 0.22
SHANK1-201ENST00000293441 POLR1CO15160 346 aaPredicted RBP16.43■□□□□ 0.22
SHANK1-201ENST00000293441 SLC19A2O60779 497 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 FRKP42685 505 aaPredicted RBP16.43■□□□□ 0.22
SHANK1-201ENST00000293441 SLC26A5P58743 744 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 IRF4Q15306 451 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 TRAM1Q15629 374 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 ARSKQ6UWY0 536 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 MAMDC2Q7Z304 686 aaPredicted RBP16.43■□□□□ 0.22
SHANK1-201ENST00000293441 CNN2Q99439 309 aaKnown RBP16.43■□□□□ 0.22
SHANK1-201ENST00000293441 PDLIM7Q9NR12 457 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 ADAMTS5Q9UNA0 930 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 PTRH2Q9Y3E5 179 aaKnown RBP16.43■□□□□ 0.22
SHANK1-201ENST00000293441 C17orf105B2RV13 164 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 APOFQ13790 326 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 MLC1Q15049 377 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 BLOC1S3Q6QNY0 202 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 UEVLDQ8IX04 471 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 HS3ST5Q8IZT8 346 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 OR9A2Q8NGT5 310 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 NELL2Q99435 816 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 SLC46A2Q9BY10 475 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 TMEM14AQ9Y6G1 99 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 POU4F2Q12837 409 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 SYCE2Q6PIF2 218 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 LIPIQ6XZB0 460 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 SLC41A3Q96GZ6 507 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 HCSTQ9UBK5 93 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 IL20RAQ9UHF4 553 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 TNFRSF1BP20333 461 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 CDKL4Q5MAI5 379 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 BCL2L15Q5TBC7 163 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 ANKLE1Q8NAG6 615 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 OR4K13Q8NH42 304 aa16.43■□□□□ 0.22
SHANK1-201ENST00000293441 LAMP1P11279 417 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 ZNF28P17035 718 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 TMEM69Q5SWH9 247 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 ATAD3CQ5T2N8 411 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 FTMTQ8N4E7 242 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 C3orf58Q8NDZ4 430 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 TCEAL3Q969E4 200 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 PGAP3Q96FM1 320 aaPredicted RBP16.42■□□□□ 0.22
SHANK1-201ENST00000293441 BMFQ96LC9 184 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 A0A0G2JPF8 293 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 HNRNPCL3B7ZW38 293 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 M0R129 80 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 MAS1P04201 325 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 SFTPBP07988 381 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 HNRNPCL4P0DMR1 293 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 ZNF43P17038 809 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 HMBOX1Q6NT76 420 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 PNPLA1Q8N8W4 532 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 ZNF709Q8N972 641 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 C12orf43Q96C57 262 aaKnown RBP16.42■□□□□ 0.22
SHANK1-201ENST00000293441 MS4A4AQ96JQ5 239 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 INPP5KQ9BT40 448 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 MTHFD2LQ9H903 347 aaPredicted RBP16.42■□□□□ 0.22
SHANK1-201ENST00000293441 IGSF5Q9NSI5 407 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 KDM3BQ7LBC6 1761 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 H3BML4 177 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 RDH16O75452 317 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 RASAL1O95294 804 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 CTXN1P60606 82 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 CDK3Q00526 305 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 ISCA2Q86U28 154 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 MDGA1Q8NFP4 955 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 AKAP1Q92667 903 aaKnown RBP eCLIP16.42■□□□□ 0.22
SHANK1-201ENST00000293441 HOXD1Q9GZZ0 328 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 MOV10Q9HCE1 1003 aaKnown RBP16.42■□□□□ 0.22
SHANK1-201ENST00000293441 PYCR1P32322 319 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 CLCN2P51788 898 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 OR6C4Q8NGE1 309 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 L3HYPDHQ96EM0 354 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 OR5B2Q96R09 309 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 ICKQ9UPZ9 632 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 CRISP1P54107 249 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 RCAN2Q14206 197 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 HNRNPA1L2Q32P51 320 aaKnown RBP16.42■□□□□ 0.22
SHANK1-201ENST00000293441 FCRLBQ6BAA4 426 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 GRPEL2Q8TAA5 225 aa16.42■□□□□ 0.22
SHANK1-201ENST00000293441 LIN28AQ9H9Z2 209 aaKnown RBP16.42■□□□□ 0.22
SHANK1-201ENST00000293441 ZNF850A8MQ14 1090 aa16.41■□□□□ 0.22
SHANK1-201ENST00000293441 H3BUI4 141 aa16.41■□□□□ 0.22
SHANK1-201ENST00000293441 OXSR1O95747 527 aaPredicted RBP16.41■□□□□ 0.22
SHANK1-201ENST00000293441 RBMXP38159 391 aaKnown RBP16.41■□□□□ 0.22
SHANK1-201ENST00000293441 ACTA2P62736 377 aa16.41■□□□□ 0.22
SHANK1-201ENST00000293441 ACTG2P63267 376 aa16.41■□□□□ 0.22
SHANK1-201ENST00000293441 DPPA4Q7L190 304 aa16.41■□□□□ 0.22
SHANK1-201ENST00000293441 TRAPPC6BQ86SZ2 158 aa16.41■□□□□ 0.22
SHANK1-201ENST00000293441 GPR26Q8NDV2 337 aa16.41■□□□□ 0.22
SHANK1-201ENST00000293441 OR52N2Q8NGI0 321 aa16.41■□□□□ 0.22
SHANK1-201ENST00000293441 LRR1Q96L50 414 aa16.41■□□□□ 0.22
SHANK1-201ENST00000293441 ACAD8Q9UKU7 415 aa16.41■□□□□ 0.22
SHANK1-201ENST00000293441 DNAJC15Q9Y5T4 150 aa16.41■□□□□ 0.22
SHANK1-201ENST00000293441 SETD1AO15047 1707 aaKnown RBP16.41■□□□□ 0.22
SHANK1-201ENST00000293441 MAGEA8P43361 318 aa16.41■□□□□ 0.22
SHANK1-201ENST00000293441 CLDN10P78369 228 aa16.41■□□□□ 0.22
SHANK1-201ENST00000293441 SERTAD2Q14140 314 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms