RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 PEX1O43933 1283 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 VPS4BO75351 444 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 FBXO45P0C2W1 286 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 PRPS1L1P21108 318 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 MST1P26927 711 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 GPC1P35052 558 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 FRKP42685 505 aaPredicted RBP12.32□□□□□ -0.44
VPS28-201ENST00000292510 MEOX1P50221 254 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 MANFP55145 182 aaKnown RBP12.32□□□□□ -0.44
VPS28-201ENST00000292510 NME5P56597 212 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 CLDN8P56748 225 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 CORO7P57737 925 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 FBXW4P57775 412 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 RNFT1Q5M7Z0 435 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 CPTPQ5TA50 214 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 ZNF324BQ6AW86 544 aaPredicted RBP12.32□□□□□ -0.44
VPS28-201ENST00000292510 NXNQ6DKJ4 435 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 DESI1Q6ICB0 168 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 NPSR1Q6W5P4 371 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 RTL4Q6ZR62 310 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 FAM47EQ6ZV65 393 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 WDR53Q7Z5U6 358 aaPredicted RBP12.32□□□□□ -0.44
VPS28-201ENST00000292510 BCORP1Q8N888 145 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 GALNT11Q8NCW6 608 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 FAM13CQ8NE31 585 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 OR10G3Q8NGC4 313 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 CKAP2Q8WWK9 683 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 TP53INP1Q96A56 240 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 ERP27Q96DN0 273 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 ELP4Q96EB1 424 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 ZBED6CLQ96FA7 236 aaPredicted RBP12.32□□□□□ -0.44
VPS28-201ENST00000292510 LCORQ96JN0 433 aaPredicted RBP12.32□□□□□ -0.44
VPS28-201ENST00000292510 VSTM2LQ96N03 204 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 C7orf26Q96N11 449 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 FRMD6Q96NE9 622 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 OR52B2Q96RD2 323 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 TSPAN10Q9H1Z9 355 aaPredicted RBP12.32□□□□□ -0.44
VPS28-201ENST00000292510 DDX18Q9NVP1 670 aaKnown RBP12.32□□□□□ -0.44
VPS28-201ENST00000292510 VPS4AQ9UN37 437 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 C19orf53Q9UNZ5 99 aaPredicted RBP12.32□□□□□ -0.44
VPS28-201ENST00000292510 KLF13Q9Y2Y9 288 aaPredicted RBP12.32□□□□□ -0.44
VPS28-201ENST00000292510 NPFFR2Q9Y5X5 522 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 USH1CQ9Y6N9 552 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 SVILO95425 2214 aa12.31□□□□□ -0.44
VPS28-201ENST00000292510 A0A087WV62 115 aa12.31□□□□□ -0.44
VPS28-201ENST00000292510 ANKRD28O15084 1053 aa12.31□□□□□ -0.44
VPS28-201ENST00000292510 DIAPH2O60879 1101 aa12.31□□□□□ -0.44
VPS28-201ENST00000292510 BCAS2O75934 225 aaPredicted RBP12.31□□□□□ -0.44
VPS28-201ENST00000292510 ABCD3P28288 659 aa12.31□□□□□ -0.44
VPS28-201ENST00000292510 PIGAP37287 484 aa12.31□□□□□ -0.44
VPS28-201ENST00000292510 RPL3P39023 403 aaKnown RBP12.31□□□□□ -0.44
VPS28-201ENST00000292510 PPICP45877 212 aa12.31□□□□□ -0.44
VPS28-201ENST00000292510 TDGF1P3P51864 188 aa12.31□□□□□ -0.44
VPS28-201ENST00000292510 ZNF155Q12901 538 aaPredicted RBP12.31□□□□□ -0.44
VPS28-201ENST00000292510 PGS1Q32NB8 556 aa12.31□□□□□ -0.44
VPS28-201ENST00000292510 PRAMEF20Q5VT98 475 aa12.31□□□□□ -0.44
VPS28-201ENST00000292510 OGFOD2Q6N063 350 aa12.31□□□□□ -0.44
VPS28-201ENST00000292510 ATCAYQ86WG3 371 aa12.31□□□□□ -0.44
VPS28-201ENST00000292510 OR2L13Q8N349 312 aa12.31□□□□□ -0.44
VPS28-201ENST00000292510 GOLM1Q8NBJ4 401 aa12.31□□□□□ -0.44
VPS28-201ENST00000292510 C17orf47Q8NEP4 570 aa12.31□□□□□ -0.44
VPS28-201ENST00000292510 ZFP28Q8NHY6 868 aa12.31□□□□□ -0.44
VPS28-201ENST00000292510 NR4A3Q92570 626 aa12.31□□□□□ -0.44
VPS28-201ENST00000292510 COQ8BQ96D53 544 aa12.31□□□□□ -0.44
VPS28-201ENST00000292510 MAELQ96JY0 434 aaKnown RBP12.31□□□□□ -0.44
VPS28-201ENST00000292510 MARK4Q96L34 752 aa12.31□□□□□ -0.44
VPS28-201ENST00000292510 SGCZQ96LD1 299 aa12.31□□□□□ -0.44
VPS28-201ENST00000292510 SLX1AQ9BQ83 275 aa12.31□□□□□ -0.44
VPS28-201ENST00000292510 SH2D2AQ9NP31 389 aa12.31□□□□□ -0.44
VPS28-201ENST00000292510 ACSS1Q9NUB1 689 aaPredicted RBP12.31□□□□□ -0.44
VPS28-201ENST00000292510 TAS2R9Q9NYW1 312 aa12.31□□□□□ -0.44
VPS28-201ENST00000292510 GPR55Q9Y2T6 319 aaPredicted RBP12.31□□□□□ -0.44
VPS28-201ENST00000292510 CHCHD2Q9Y6H1 151 aaPredicted RBP12.31□□□□□ -0.44
VPS28-201ENST00000292510 A0A1W2PRB8 838 aa12.3□□□□□ -0.44
VPS28-201ENST00000292510 FRG2CA6NGY1 282 aa12.3□□□□□ -0.44
VPS28-201ENST00000292510 C9JVG2 144 aa12.3□□□□□ -0.44
VPS28-201ENST00000292510 KLRC4-KLRK1H3BQV0 150 aa12.3□□□□□ -0.44
VPS28-201ENST00000292510 COQ9O75208 318 aa12.3□□□□□ -0.44
VPS28-201ENST00000292510 ERN1O75460 977 aaKnown RBP12.3□□□□□ -0.44
VPS28-201ENST00000292510 SLITRK5O94991 958 aa12.3□□□□□ -0.44
VPS28-201ENST00000292510 PSMG1O95456 288 aa12.3□□□□□ -0.44
VPS28-201ENST00000292510 CBX6O95503 412 aa12.3□□□□□ -0.44
VPS28-201ENST00000292510 C6orf47O95873 294 aa12.3□□□□□ -0.44
VPS28-201ENST00000292510 CRYABP02511 175 aaKnown RBP12.3□□□□□ -0.44
VPS28-201ENST00000292510 P04436 131 aa12.3□□□□□ -0.44
VPS28-201ENST00000292510 CT45A8P0DMV1 189 aa12.3□□□□□ -0.44
VPS28-201ENST00000292510 CT45A9P0DMV2 189 aa12.3□□□□□ -0.44
VPS28-201ENST00000292510 DRD5P21918 477 aa12.3□□□□□ -0.44
VPS28-201ENST00000292510 DNASE1L1P49184 302 aa12.3□□□□□ -0.44
VPS28-201ENST00000292510 PRKAG1P54619 331 aa12.3□□□□□ -0.44
VPS28-201ENST00000292510 NRG3P56975 720 aa12.3□□□□□ -0.44
VPS28-201ENST00000292510 C21orf58P58505 322 aa12.3□□□□□ -0.44
VPS28-201ENST00000292510 DCAF7P61962 342 aa12.3□□□□□ -0.44
VPS28-201ENST00000292510 PLCXD2Q0VAA5 305 aa12.3□□□□□ -0.44
VPS28-201ENST00000292510 NTRK2Q16620 822 aa12.3□□□□□ -0.44
VPS28-201ENST00000292510 CT45A2Q5DJT8 189 aa12.3□□□□□ -0.44
VPS28-201ENST00000292510 TMEM198Q66K66 360 aa12.3□□□□□ -0.44
VPS28-201ENST00000292510 BICRALQ6AI39 1079 aa12.3□□□□□ -0.44
VPS28-201ENST00000292510 OR4F3Q6IEY1 312 aa12.3□□□□□ -0.44
VPS28-201ENST00000292510 SZRD1Q7Z422 152 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms