RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 BBS1Q8NFJ9 593 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 WDR34Q96EX3 536 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 PLSCR3Q9NRY6 295 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 P2RX2Q9UBL9 471 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 WBP11Q9Y2W2 641 aaKnown RBP20.09■□□□□ 0.81
TRIM28-201ENST00000253024 DPM1O60762 260 aa20.08■□□□□ 0.81
TRIM28-201ENST00000253024 GIPRP48546 466 aa20.08■□□□□ 0.81
TRIM28-201ENST00000253024 ZNF79Q15937 498 aa20.08■□□□□ 0.81
TRIM28-201ENST00000253024 C6orf132Q5T0Z8 1188 aa20.08■□□□□ 0.81
TRIM28-201ENST00000253024 MLIPQ5VWP3 458 aa20.08■□□□□ 0.81
TRIM28-201ENST00000253024 ZCCHC10Q8TBK6 192 aa20.08■□□□□ 0.81
TRIM28-201ENST00000253024 CNRIP1Q96F85 164 aaPredicted RBP20.08■□□□□ 0.81
TRIM28-201ENST00000253024 OR2A14Q96R47 310 aa20.08■□□□□ 0.81
TRIM28-201ENST00000253024 SLC25A19Q9HC21 320 aa20.08■□□□□ 0.81
TRIM28-201ENST00000253024 CCDC59Q9P031 241 aaKnown RBP20.08■□□□□ 0.81
TRIM28-201ENST00000253024 CSNK1G3Q9Y6M4 447 aa20.08■□□□□ 0.81
TRIM28-201ENST00000253024 KIAA1671Q9BY89 1806 aa20.08■□□□□ 0.81
TRIM28-201ENST00000253024 A0A1W2PR48 441 aa20.08■□□□□ 0.8
TRIM28-201ENST00000253024 FUT5Q11128 374 aa20.08■□□□□ 0.8
TRIM28-201ENST00000253024 ILKQ13418 452 aa20.08■□□□□ 0.8
TRIM28-201ENST00000253024 TIMM50Q3ZCQ8 353 aa20.08■□□□□ 0.8
TRIM28-201ENST00000253024 SLC35F1Q5T1Q4 408 aa20.08■□□□□ 0.8
TRIM28-201ENST00000253024 KCT2Q8NC54 265 aa20.08■□□□□ 0.8
TRIM28-201ENST00000253024 IL17RDQ8NFM7 739 aa20.08■□□□□ 0.8
TRIM28-201ENST00000253024 OR8D4Q8NGM9 314 aa20.08■□□□□ 0.8
TRIM28-201ENST00000253024 DPEP2Q9H4A9 486 aa20.08■□□□□ 0.8
TRIM28-201ENST00000253024 SLC35C2Q9NQQ7 365 aa20.08■□□□□ 0.8
TRIM28-201ENST00000253024 MAN2C1Q9NTJ4 1040 aa20.08■□□□□ 0.8
TRIM28-201ENST00000253024 TXNL4BQ9NX01 149 aaKnown RBP20.08■□□□□ 0.8
TRIM28-201ENST00000253024 KCND3Q9UK17 655 aa20.08■□□□□ 0.8
TRIM28-201ENST00000253024 NPIPA5A0A0B4J1W7 369 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 NPIPA7E9PJI5 369 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 HRO43593 1189 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 PIP5K1CO60331 668 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 MRPS14O60783 128 aaKnown RBP20.07■□□□□ 0.8
TRIM28-201ENST00000253024 NPIPA8P0DM63 369 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 PPP2R1BP30154 601 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 PCBP4P57723 403 aaKnown RBP20.07■□□□□ 0.8
TRIM28-201ENST00000253024 PYDC2Q56P42 97 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 SLX4IPQ5VYV7 408 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 RRM2BQ7LG56 351 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 TAPBPLQ9BX59 468 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 IGFLR1Q9H665 355 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 SLITRK5O94991 958 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 LALBAP00709 142 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 TP53P04637 393 aaPredicted RBP20.07■□□□□ 0.8
TRIM28-201ENST00000253024 RORCP51449 518 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 C1DQ13901 141 aaKnown RBP20.07■□□□□ 0.8
TRIM28-201ENST00000253024 FCRLBQ6BAA4 426 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 KIAA0907Q7Z7F0 614 aaPredicted RBP20.07■□□□□ 0.8
TRIM28-201ENST00000253024 NKAIN4Q8IVV8 208 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 OR8J1Q8NGP2 316 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 ITPKCQ96DU7 683 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 RNFT2Q96EX2 444 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 ZNF582Q96NG8 517 aaPredicted RBP20.07■□□□□ 0.8
TRIM28-201ENST00000253024 MGAT4BQ9UQ53 548 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 RPL36Q9Y3U8 105 aaKnown RBP20.07■□□□□ 0.8
TRIM28-201ENST00000253024 A0A087WUU8 490 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 EDDM13A0A1B0GTR0 161 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 FAAHO00519 579 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 DNAJB6O75190 326 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 GNSP15586 552 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 SLC16A1P53985 500 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 IFITM2Q01629 132 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 ZNF730Q6ZMV8 503 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 KLHDC8AQ8IYD2 350 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 BADQ92934 168 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 YIPF2Q9BWQ6 316 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 MND1Q9BWT6 205 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 HOXD1Q9GZZ0 328 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 MED20Q9H944 212 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 NEUROD4Q9HD90 331 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 PRSS16Q9NQE7 514 aa20.07■□□□□ 0.8
TRIM28-201ENST00000253024 LSM2Q9Y333 95 aaKnown RBP20.07■□□□□ 0.8
TRIM28-201ENST00000253024 CFAP54Q96N23 3096 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 ISPDA4D126 451 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 FAM170BA6NMN3 283 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 SRPRAP08240 638 aaKnown RBP20.06■□□□□ 0.8
TRIM28-201ENST00000253024 IL7P13232 177 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 TRHRP34981 398 aaPredicted RBP20.06■□□□□ 0.8
TRIM28-201ENST00000253024 CD83Q01151 205 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 E2F2Q14209 437 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 TBC1D19Q8N5T2 526 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 OR4E2Q8NGC2 313 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 A4GALTQ9NPC4 353 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 UGT2A1Q9Y4X1 527 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 SH3D21A4FU49 640 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 CD8B2A6NJW9 211 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 ISM1B1AKI9 464 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 DYRK3O43781 588 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 PTTG1O95997 202 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 GNRH1P01148 92 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 CD8BP10966 210 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 STXBP1P61764 594 aaKnown RBP20.06■□□□□ 0.8
TRIM28-201ENST00000253024 ZNF311Q5JNZ3 666 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 MFSD4BQ5TF39 518 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 PAMR1Q6UXH9 720 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 UNC5DQ6UXZ4 953 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 GHDCQ8N2G8 530 aa20.06■□□□□ 0.8
TRIM28-201ENST00000253024 HDDC3Q8N4P3 179 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 104.4 ms