RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 SCAMP5Q8TAC9 235 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 C2CD4CQ8TF44 421 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 TCEAL2Q9H3H9 227 aaPredicted RBP9.96□□□□□ -0.81
VCL-201ENST00000211998 ZMAT5Q9UDW3 170 aaKnown RBP9.96□□□□□ -0.81
VCL-201ENST00000211998 A0A0U1RQF3 1178 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 EDDM13A0A1B0GTR0 161 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 M0R129 80 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 SDC3O75056 442 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 SCGB1D1O95968 90 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 HCKP08631 526 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 ALPIP09923 528 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 ITGAMP11215 1152 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 ARSBP15848 533 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 BDKRB2P30411 391 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 VIPR1P32241 457 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 ACTC1P68032 377 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 ACTA1P68133 377 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 GHRHRQ02643 423 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 CRHR2Q13324 411 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 METTL2BQ6P1Q9 378 aaKnown RBP9.96□□□□□ -0.81
VCL-201ENST00000211998 TMCO2Q7Z6W1 182 aaPredicted RBP9.96□□□□□ -0.81
VCL-201ENST00000211998 ZNF709Q8N972 641 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 FRZBQ92765 325 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 METTL2AQ96IZ6 378 aaKnown RBP9.96□□□□□ -0.81
VCL-201ENST00000211998 WRAP73Q9P2S5 460 aaPredicted RBP9.96□□□□□ -0.81
VCL-201ENST00000211998 OR6C6A6NF89 314 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 H3BUI4 141 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 MAT2AP31153 395 aaKnown RBP9.96□□□□□ -0.81
VCL-201ENST00000211998 ARL3P36405 182 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 GLP1RP43220 463 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 RAP2BP61225 183 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 HERV-K104P61576 105 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 CHRFAM7AQ494W8 412 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 RNASE10Q5GAN6 216 aaKnown RBP9.96□□□□□ -0.81
VCL-201ENST00000211998 BEX5Q5H9J7 111 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 STEAP4Q687X5 459 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 NOXRED1Q6NXP6 359 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 THOC6Q86W42 341 aaKnown RBP9.96□□□□□ -0.81
VCL-201ENST00000211998 ZC3H3Q8IXZ2 948 aaKnown RBP9.96□□□□□ -0.81
VCL-201ENST00000211998 SLC25A36Q96CQ1 311 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 C10orf90Q96M02 699 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 OR14A2Q96R54 314 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 SYNPO2LQ9H987 977 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 CERS4Q9HA82 394 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 POPDC3Q9HBV1 291 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 NOX3Q9HBY0 568 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 GALNT9Q9HCQ5 603 aa9.96□□□□□ -0.81
VCL-201ENST00000211998 A0A1W2PRU2 124 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 SEC14L2O76054 403 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 TXNDC12O95881 172 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 CSTBP04080 98 aaKnown RBP9.96□□□□□ -0.82
VCL-201ENST00000211998 KCNE1P15382 129 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 NAA10P41227 235 aaPredicted RBP9.96□□□□□ -0.82
VCL-201ENST00000211998 MAGEA3P43357 314 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 SH3BP2P78314 561 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 ZNF33AQ06730 810 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 FCN2Q15485 313 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 RAB30Q15771 203 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 NADSYN1Q6IA69 706 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 MS4A15Q8N5U1 240 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 FBXO15Q8NCQ5 510 aaPredicted RBP9.96□□□□□ -0.82
VCL-201ENST00000211998 LRRC15Q8TF66 581 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 SLC7A6Q92536 515 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 RGMAQ96B86 450 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 SLC25A44Q96H78 314 aaPredicted RBP9.96□□□□□ -0.82
VCL-201ENST00000211998 MAP6Q96JE9 813 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 SMOC2Q9H3U7 446 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 RDH14Q9HBH5 336 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 NEUROD4Q9HD90 331 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 NME7Q9Y5B8 376 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 PARP4Q9UKK3 1724 aaKnown RBP9.96□□□□□ -0.82
VCL-201ENST00000211998 K7EPK0 472 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 M0R2N6 131 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 DCNP07585 359 aaKnown RBP9.96□□□□□ -0.82
VCL-201ENST00000211998 NFYAP23511 347 aaPredicted RBP9.96□□□□□ -0.82
VCL-201ENST00000211998 ACTR1BP42025 376 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 ACTR1AP61163 376 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 GALK2Q01415 458 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 LRRC32Q14392 662 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 ABRAXAS2Q15018 415 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 TBCEQ15813 527 aaPredicted RBP9.96□□□□□ -0.82
VCL-201ENST00000211998 DPY19L2P1Q6NXN4 242 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 ZNF705AQ6ZN79 300 aaPredicted RBP9.96□□□□□ -0.82
VCL-201ENST00000211998 PXKQ7Z7A4 578 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 ZNF546Q86UE3 836 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 LAX1Q8IWV1 398 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 FAM71E2Q8N5Q1 922 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 SUMF2Q8NBJ7 301 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 NLGN2Q8NFZ4 835 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 OR56A3Q8NH54 315 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 SAMD11Q96NU1 681 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 MCHR1Q99705 422 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 ATG4BQ9Y4P1 393 aa9.96□□□□□ -0.82
VCL-201ENST00000211998 A8MVJ9 347 aa9.95□□□□□ -0.82
VCL-201ENST00000211998 ADAM12O43184 909 aa9.95□□□□□ -0.82
VCL-201ENST00000211998 FADS1O60427 444 aa9.95□□□□□ -0.82
VCL-201ENST00000211998 RPS17P08708 135 aaKnown RBP9.95□□□□□ -0.82
VCL-201ENST00000211998 UGT2B7P16662 529 aa9.95□□□□□ -0.82
VCL-201ENST00000211998 ZNF26P17031 533 aaPredicted RBP9.95□□□□□ -0.82
VCL-201ENST00000211998 PRKAR1BP31321 381 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms