RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 DCDC1P59894 354 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 POLR2LP62875 67 aaKnown RBP10.07□□□□□ -0.8
USP28-201ENST00000003302 ZNF77Q15935 545 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 ZNF630Q2M218 657 aaPredicted RBP10.07□□□□□ -0.8
USP28-201ENST00000003302 C9orf64Q5T6V5 341 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 OR4N5Q8IXE1 308 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 CADM2Q8N3J6 435 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 TFGQ92734 400 aaPredicted RBP10.07□□□□□ -0.8
USP28-201ENST00000003302 UPRTQ96BW1 309 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 TIMP4Q99727 224 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 TBC1D17Q9HA65 648 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 PEX16Q9Y5Y5 336 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 PCCBP05166 539 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 H1F0P07305 194 aaKnown RBP10.07□□□□□ -0.8
USP28-201ENST00000003302 EFNB1P98172 346 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 DHCR24Q15392 516 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 NDUFAF5Q5TEU4 345 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 MFSD4BQ5TF39 518 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 KHDRBS2Q5VWX1 349 aaKnown RBP10.07□□□□□ -0.8
USP28-201ENST00000003302 NANOGNBQ7Z5D8 188 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 OR4Q3Q8NH05 313 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 MS4A3Q96HJ5 214 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 DPH7Q9BTV6 452 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 MS4A8Q9BY19 250 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 NLNQ9BYT8 704 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 ZCCHC3Q9NUD5 404 aaKnown RBP10.07□□□□□ -0.8
USP28-201ENST00000003302 FBXO34Q9NWN3 711 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 SPENQ96T58 3664 aaKnown RBP10.06□□□□□ -0.8
USP28-201ENST00000003302 A0A0B4J203 849 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 FOXE1O00358 373 aaPredicted RBP10.06□□□□□ -0.8
USP28-201ENST00000003302 SOCS6O14544 535 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 PLOD3O60568 738 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 ZNF30P17039 623 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 GALK2Q01415 458 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 CHRNEQ04844 493 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 ZNF155Q12901 538 aaPredicted RBP10.06□□□□□ -0.8
USP28-201ENST00000003302 ILKQ13418 452 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 EIF4HQ15056 248 aaKnown RBP10.06□□□□□ -0.8
USP28-201ENST00000003302 CCNJQ5T5M9 372 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 KIAA1161Q6NSJ0 714 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 SLC39A5Q6ZMH5 540 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 RFLNBQ8N5W9 214 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 OR4M1Q8NGD0 313 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 SMPDL3AQ92484 453 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 DIRAS2Q96HU8 199 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 ZNF649Q9BS31 505 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 RMI1Q9H9A7 625 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 CD93Q9NPY3 652 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 SEMA4GQ9NTN9 838 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 SPHK1Q9NYA1 384 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 KCNK6Q9Y257 313 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 CFL2Q9Y281 166 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 WBP11Q9Y2W2 641 aaKnown RBP10.06□□□□□ -0.8
USP28-201ENST00000003302 DYRK1BQ9Y463 629 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 NPIPA5A0A0B4J1W7 369 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 HYKKA2RU49 373 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 NPIPA7E9PJI5 369 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 IDH3BO43837 385 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 EML2O95834 649 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 NPIPA8P0DM63 369 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 CLUP10909 449 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 HSD3B2P26439 372 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 GAB4Q2WGN9 574 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 FAM9CQ8IZT9 166 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 MINDY2Q8NBR6 621 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 KLHL6Q8WZ60 621 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 OTULINQ96BN8 352 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 ORAI1Q96D31 301 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 TMEM80Q96HE8 168 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 FAM83CQ9BQN1 747 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 TDRD6O60522 2096 aaKnown RBP10.06□□□□□ -0.8
USP28-201ENST00000003302 PRG2P13727 222 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 CSTF2P33240 577 aaKnown RBP eCLIP10.06□□□□□ -0.8
USP28-201ENST00000003302 CLCNKAP51800 687 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 HEPACAMQ14CZ8 416 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 ARMC4Q5T2S8 1044 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 TBC1D19Q8N5T2 526 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 SLC25A46Q96AG3 418 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 CHFRQ96EP1 664 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 MKLN1Q9UL63 735 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 A0A1W2PR48 441 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 E9PI62 339 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 IMPA2O14732 288 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 KCNC3Q14003 757 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 RNASE12Q5GAN4 147 aaKnown RBP10.06□□□□□ -0.8
USP28-201ENST00000003302 RPTNQ6XPR3 784 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 FRMD1Q8N878 549 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 WDR34Q96EX3 536 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 OSGEPL1Q9H4B0 414 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 NLKQ9UBE8 527 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 ZNF221Q9UK13 617 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 TBX21Q9UL17 535 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 ANGPT4Q9Y264 503 aa10.06□□□□□ -0.8
USP28-201ENST00000003302 TRBV23OR9-2A0A075B6M9 112 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 IGLON5A6NGN9 336 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 PAHP00439 452 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 UQCRC2P22695 453 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 EVI2BP34910 448 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 OR10A3P58181 314 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 FGL2Q14314 439 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms