RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 SETD7Q8WTS6 366 aaKnown RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 TCP11Q8WWU5 503 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 ARNTL2Q8WYA1 636 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 PRCCQ92733 491 aaPredicted RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 TEKT1Q969V4 418 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 FAM46BQ96A09 425 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 SIPA1Q96FS4 1042 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 C16orf58Q96GQ5 468 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 COG3Q96JB2 828 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 SLC35E1Q96K37 410 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 CASD1Q96PB1 797 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 PRAM1Q96QH2 718 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 ACCSQ96QU6 501 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 CPXM1Q96SM3 734 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 PARK7Q99497 189 aaKnown RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 DDX50Q9BQ39 737 aaKnown RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 C19orf43Q9BQ61 176 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 C17orf62Q9BQA9 187 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 FAM173AQ9BQD7 235 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 POLR3GLQ9BT43 218 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 HCAR1Q9BXC0 346 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 GPR174Q9BXC1 333 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 AP1M1Q9BXS5 423 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 CACNG6Q9BXT2 260 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 NACAP1Q9BZK3 213 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 TRIM7Q9C029 511 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 CCSER1Q9C0I3 900 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 TSPYL1Q9H0U9 437 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 TMX4Q9H1E5 349 aaPredicted RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 OPN3Q9H1Y3 402 aaPredicted RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 MTIF3Q9H2K0 278 aaKnown RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 SP140LQ9H930 580 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 RNPEPL1Q9HAU8 725 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 ADGRL4Q9HBW9 690 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 UBE2TQ9NPD8 197 aaPredicted RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 MEPEQ9NQ76 525 aaPredicted RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 ZNF331Q9NQX6 463 aaPredicted RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 DAZ3Q9NR90 486 aaKnown RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP0.25□□□□□ -2.37
VPS35-212ENST00000640313 FAM212BQ9NTI7 297 aaPredicted RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 PDRG1Q9NUG6 133 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 DNAJC17Q9NVM6 304 aaKnown RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 IMPAD1Q9NX62 359 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 TAS2R16Q9NYV7 291 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 KLRF1Q9NZS2 232 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 RAI14Q9P0K7 980 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 SENP1Q9P0U3 644 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 MBD2Q9UBB5 411 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 RPS6KB2Q9UBS0 482 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 ZNF282Q9UDV7 671 aaPredicted RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 CFDP1Q9UEE9 299 aaPredicted RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 SLC2A6Q9UGQ3 507 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 APOBEC3BQ9UH17 382 aaKnown RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 SWAP70Q9UH65 585 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 CIDEBQ9UHD4 219 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 PURGQ9UJV8 347 aaKnown RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 GTF3C4Q9UKN8 822 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 EMCNQ9ULC0 261 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 DIMT1Q9UNQ2 313 aaKnown RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 ERVK-19Q9WJR5 959 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 LIPT1Q9Y234 373 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 KCNK6Q9Y257 313 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 FOXA2Q9Y261 457 aaPredicted RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 EXOC6BQ9Y2D4 811 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 ZFP37Q9Y6Q3 630 aaPredicted RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 MUC6Q6W4X9 2439 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 METP08581 1390 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 ZMYM6O95789 1325 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 A0A1W2PQ67 120 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 ARHGEF37A1IGU5 675 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 LRCOL1A6NCL2 159 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 FBLL1A6NHQ2 334 aaKnown RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 A8MX80 341 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 TMCO5BA8MYB1 307 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 H0Y626 953 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 PDLIM1O00151 329 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 SLC28A1O00337 649 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 CYB561D2O14569 222 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 SH2D1BO14796 132 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 TM9SF1O15321 606 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 PSMD3O43242 534 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 EMC8O43402 210 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 RANBP6O60518 1105 aaKnown RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 RAMP1O60894 148 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 STAM2O75886 525 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 PDE5AO76074 875 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 REC8O95072 547 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 WISP3O95389 354 aaPredicted RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 PRAMEF12O95522 483 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 CXCL14O95715 111 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 GOT2P00505 430 aaKnown RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 TIMP1P01033 207 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 CHRNGP07510 517 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 ASNSP08243 561 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 SERPINF2P08697 491 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 SNRPCP09234 159 aaKnown RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 MMP10P09238 476 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 TSPY3P0CV98 308 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 TSPY8P0CW00 308 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 TPBGLP0DKB5 382 aa0.24□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms