RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 RAD51DO75771 328 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 CEACAM4O75871 244 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 LETM1O95202 739 aaPredicted RBP0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 IGKV5-2P06315 115 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 HOXD4P09016 255 aaPredicted RBP0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 SKILP12757 684 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 CCL5P13501 91 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 SCG2P13521 617 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 MYOGP15173 224 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 CYP2B6P20813 491 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 GJB2P29033 226 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 FCGR2BP31994 310 aaPredicted RBP0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 FCGR2CP31995 323 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 SPRP35270 261 aaPredicted RBP0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 HMGCLP35914 325 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 ETV5P41161 510 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 SLC1A4P43007 532 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 PTGER3P43115 390 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 ALDH3B1P43353 468 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 BRCC3P46736 316 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 CDX1P47902 265 aaPredicted RBP0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 ZFP36L2P47974 494 aaKnown RBP0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 HLCSP50747 726 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 CLDN15P56746 228 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 BACE1P56817 501 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 OR1D5P58170 312 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 RPS27AP62979 156 aaKnown RBP0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 FKBP1BP68106 108 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 RPP38P78345 283 aaKnown RBP0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 MAP2K1Q02750 393 aaPredicted RBP0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 SLC3A1Q07837 685 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 TFCP2Q12800 502 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 GRB14Q14449 540 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 ABRAXAS2Q15018 415 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 ACKR1Q16570 336 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 C3AR1Q16581 482 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 UPP1Q16831 310 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 LRRC26Q2I0M4 334 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 C15orf32Q32M92 178 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 SLC22A6Q4U2R8 563 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 RFTN2Q52LD8 501 aaPredicted RBP0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 NHSL2Q5HYW2 709 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 MUC21Q5SSG8 566 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 MARC1Q5VT66 337 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 LRRC38Q5VT99 294 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 LIPJQ5W064 366 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 LEMD1Q68G75 181 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 TXNRD3NBQ6F5E7 133 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 PM20D1Q6GTS8 502 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 EMBQ6PCB8 327 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 TRAT1Q6PIZ9 186 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 REG3GQ6UW15 175 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 C3P1Q6ZMU1 363 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 ZNF730Q6ZMV8 503 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 Q6ZVQ6 151 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 IL17RELQ6ZVW7 336 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 USP50Q70EL3 339 aaPredicted RBP0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 TMUB2Q71RG4 321 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 GALNTL5Q7Z4T8 443 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 CEACAM19Q7Z692 300 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 ADCK1Q86TW2 530 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 HIPK1Q86Z02 1210 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 CREBRFQ8IUR6 639 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 OR8H3Q8N146 312 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 GPD1LQ8N335 351 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 FGFRL1Q8N441 504 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 TMCO5AQ8N6Q1 288 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 CD177Q8N6Q3 437 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 SAMD12Q8N8I0 201 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 C4orf32Q8N8J7 132 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 NHLRC2Q8NBF2 726 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 SUMF1Q8NBK3 374 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 RNF149Q8NC42 400 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 CCDC197Q8NCU1 140 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 ICA1LQ8NDH6 482 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 PRSS33Q8NF86 280 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 GANCQ8TET4 914 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 DEPDC1BQ8WUY9 529 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 DNASE1L2Q92874 299 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 FAM162AQ96A26 154 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 SLC35C1Q96A29 364 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 ULK4Q96C45 1275 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 DCPSQ96C86 337 aaKnown RBP0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 AP2M1Q96CW1 435 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 C16orf58Q96GQ5 468 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 CDKN2AIPNLQ96HQ2 116 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 LINC00167Q96N53 147 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 RUNDC3BQ96NL0 473 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 LRRC3BQ96PB8 259 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 DEFB118Q96PH6 123 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 ALKBH3Q96Q83 286 aaPredicted RBP0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 TAAR6Q96RI8 345 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 PLEKHF1Q96S99 279 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 PARK7Q99497 189 aaKnown RBP0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 HNRNPABQ99729 332 aaKnown RBP0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 C17orf62Q9BQA9 187 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 ZNF559Q9BR84 538 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 OVOL2Q9BRP0 275 aa0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 UTP14AQ9BVJ6 771 aaKnown RBP0.88□□□□□ -2.27
SMARCB1-209ENST00000635578 LCE3DQ9BYE3 92 aa0.88□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms