RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 PCSK2P16519 638 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 PTGER1P34995 402 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 HPCAL1P37235 193 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 NR0B1P51843 470 aaKnown RBP19.15■□□□□ 0.66
CLN3-240ENST00000631023 NCBP2P52298 156 aaKnown RBP eCLIP19.15■□□□□ 0.66
CLN3-240ENST00000631023 NRG3P56975 720 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 MRPS35P82673 323 aaKnown RBP19.15■□□□□ 0.66
CLN3-240ENST00000631023 EXOSC7Q15024 291 aaKnown RBP19.15■□□□□ 0.66
CLN3-240ENST00000631023 IL23RQ5VWK5 629 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 LIX1Q8N485 282 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 GOLM1Q8NBJ4 401 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 CLHC1Q8NHS4 586 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 KAT2AQ92830 837 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 PPP1R36Q96LQ0 422 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 PNPOQ9NVS9 261 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 SH3BP4Q9P0V3 963 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 KLF11O14901 512 aa19.14■□□□□ 0.65
CLN3-240ENST00000631023 JUNP05412 331 aaKnown RBP19.14■□□□□ 0.65
CLN3-240ENST00000631023 EMX2Q04743 252 aa19.14■□□□□ 0.65
CLN3-240ENST00000631023 MDGA2Q7Z553 956 aa19.14■□□□□ 0.65
CLN3-240ENST00000631023 PNPLA5Q7Z6Z6 429 aaPredicted RBP19.14■□□□□ 0.65
CLN3-240ENST00000631023 PSD4Q8NDX1 1056 aa19.14■□□□□ 0.65
CLN3-240ENST00000631023 OR52R1Q8NGF1 315 aa19.14■□□□□ 0.65
CLN3-240ENST00000631023 NR4A3Q92570 626 aa19.14■□□□□ 0.65
CLN3-240ENST00000631023 ADIPOR1Q96A54 375 aa19.14■□□□□ 0.65
CLN3-240ENST00000631023 C1orf50Q9BV19 199 aa19.14■□□□□ 0.65
CLN3-240ENST00000631023 NOP53Q9NZM5 478 aaKnown RBP19.14■□□□□ 0.65
CLN3-240ENST00000631023 BAHCC1Q9P281 2608 aa19.14■□□□□ 0.65
CLN3-240ENST00000631023 HIVEP3Q5T1R4 2406 aa19.14■□□□□ 0.65
CLN3-240ENST00000631023 ASPDHA6ND91 283 aa19.13■□□□□ 0.65
CLN3-240ENST00000631023 SLCO1B7G3V0H7 640 aa19.13■□□□□ 0.65
CLN3-240ENST00000631023 PDPK1O15530 556 aa19.13■□□□□ 0.65
CLN3-240ENST00000631023 PLOD3O60568 738 aa19.13■□□□□ 0.65
CLN3-240ENST00000631023 ZNF354AO60765 605 aaPredicted RBP19.13■□□□□ 0.65
CLN3-240ENST00000631023 CBX7O95931 251 aa19.13■□□□□ 0.65
CLN3-240ENST00000631023 EDN3P14138 238 aa19.13■□□□□ 0.65
CLN3-240ENST00000631023 DCAF7P61962 342 aa19.13■□□□□ 0.65
CLN3-240ENST00000631023 ELOAQ14241 798 aaKnown RBP19.13■□□□□ 0.65
CLN3-240ENST00000631023 PRSS53Q2L4Q9 553 aa19.13■□□□□ 0.65
CLN3-240ENST00000631023 ZNF441Q8N8Z8 693 aa19.13■□□□□ 0.65
CLN3-240ENST00000631023 POGLUT1Q8NBL1 392 aa19.13■□□□□ 0.65
CLN3-240ENST00000631023 ZNF75CPQ92670 426 aaPredicted RBP19.13■□□□□ 0.65
CLN3-240ENST00000631023 SPACA9Q96E40 222 aaPredicted RBP19.13■□□□□ 0.65
CLN3-240ENST00000631023 AMDHD1Q96NU7 426 aa19.13■□□□□ 0.65
CLN3-240ENST00000631023 NUF2Q9BZD4 464 aa19.13■□□□□ 0.65
CLN3-240ENST00000631023 AKTIPQ9H8T0 292 aa19.13■□□□□ 0.65
CLN3-240ENST00000631023 DNAJC13O75165 2243 aa19.12■□□□□ 0.65
CLN3-240ENST00000631023 NADKO95544 446 aaPredicted RBP19.12■□□□□ 0.65
CLN3-240ENST00000631023 GPX3P22352 226 aa19.12■□□□□ 0.65
CLN3-240ENST00000631023 PDE7AQ13946 482 aa19.12■□□□□ 0.65
CLN3-240ENST00000631023 ZNF791Q3KP31 576 aaPredicted RBP19.12■□□□□ 0.65
CLN3-240ENST00000631023 ZNF324BQ6AW86 544 aaPredicted RBP19.12■□□□□ 0.65
CLN3-240ENST00000631023 ANKRD26P1Q6NSI1 321 aa19.12■□□□□ 0.65
CLN3-240ENST00000631023 SULF2Q8IWU5 870 aa19.12■□□□□ 0.65
CLN3-240ENST00000631023 LRRC34Q8IZ02 419 aa19.12■□□□□ 0.65
CLN3-240ENST00000631023 ST6GALNAC3Q8NDV1 305 aa19.12■□□□□ 0.65
CLN3-240ENST00000631023 ZFP28Q8NHY6 868 aa19.12■□□□□ 0.65
CLN3-240ENST00000631023 ZBED6CLQ96FA7 236 aaPredicted RBP19.12■□□□□ 0.65
CLN3-240ENST00000631023 PRPF18Q99633 342 aaKnown RBP19.12■□□□□ 0.65
CLN3-240ENST00000631023 GLIPR2Q9H4G4 154 aa19.12■□□□□ 0.65
CLN3-240ENST00000631023 CLMPQ9H6B4 373 aa19.12■□□□□ 0.65
CLN3-240ENST00000631023 MEAF6Q9HAF1 191 aa19.12■□□□□ 0.65
CLN3-240ENST00000631023 TAS2R9Q9NYW1 312 aa19.12■□□□□ 0.65
CLN3-240ENST00000631023 A0A087WV62 115 aa19.11■□□□□ 0.65
CLN3-240ENST00000631023 ANKUB1A6NFN9 424 aa19.11■□□□□ 0.65
CLN3-240ENST00000631023 TRPC5OSA6NMA1 111 aa19.11■□□□□ 0.65
CLN3-240ENST00000631023 HDAC3O15379 428 aa19.11■□□□□ 0.65
CLN3-240ENST00000631023 PEX1O43933 1283 aa19.11■□□□□ 0.65
CLN3-240ENST00000631023 CBX6O95503 412 aa19.11■□□□□ 0.65
CLN3-240ENST00000631023 FBXO45P0C2W1 286 aa19.11■□□□□ 0.65
CLN3-240ENST00000631023 GNLYP22749 145 aa19.11■□□□□ 0.65
CLN3-240ENST00000631023 SOX18P35713 384 aa19.11■□□□□ 0.65
CLN3-240ENST00000631023 TMED10P49755 219 aaKnown RBP19.11■□□□□ 0.65
CLN3-240ENST00000631023 EMDP50402 254 aa19.11■□□□□ 0.65
CLN3-240ENST00000631023 PMP22Q01453 160 aa19.11■□□□□ 0.65
CLN3-240ENST00000631023 OCRLQ01968 901 aa19.11■□□□□ 0.65
CLN3-240ENST00000631023 DYDC1Q8WWB3 177 aa19.11■□□□□ 0.65
CLN3-240ENST00000631023 HSPBAP1Q96EW2 488 aa19.11■□□□□ 0.65
CLN3-240ENST00000631023 LCORQ96JN0 433 aaPredicted RBP19.11■□□□□ 0.65
CLN3-240ENST00000631023 SLX1AQ9BQ83 275 aa19.11■□□□□ 0.65
CLN3-240ENST00000631023 SACM1LQ9NTJ5 587 aa19.11■□□□□ 0.65
CLN3-240ENST00000631023 ASIC5Q9NY37 505 aa19.11■□□□□ 0.65
CLN3-240ENST00000631023 ATP6V1HQ9UI12 483 aa19.11■□□□□ 0.65
CLN3-240ENST00000631023 MAPRE3Q9UPY8 281 aa19.11■□□□□ 0.65
CLN3-240ENST00000631023 NPFFR2Q9Y5X5 522 aa19.11■□□□□ 0.65
CLN3-240ENST00000631023 UBR5O95071 2799 aaPredicted RBP19.11■□□□□ 0.65
CLN3-240ENST00000631023 FREM3P0C091 2139 aa19.11■□□□□ 0.65
CLN3-240ENST00000631023 PLOD2O00469 737 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 SCAMP2O15127 329 aaKnown RBP19.1■□□□□ 0.65
CLN3-240ENST00000631023 ACOX3O15254 700 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 COQ9O75208 318 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 SASH3O75995 380 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 P04436 131 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 LBPP18428 481 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 PRPS1L1P21108 318 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 DRD5P21918 477 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 PPICP45877 212 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 MANFP55145 182 aaKnown RBP19.1■□□□□ 0.65
CLN3-240ENST00000631023 PPP2R2AP63151 447 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 ALDH6A1Q02252 535 aaKnown RBP19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms