RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 H7C0S8 307 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 IFIT3O14879 490 aaKnown RBP1.5□□□□□ -2.17
SCN1A-208ENST00000625916 SYT7O43581 403 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 MMP23AO75900 390 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 BDNFP23560 247 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 UGT1A3P35503 534 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 CCR4P51679 360 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 SCN1BQ07699 218 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 MFGE8Q08431 387 aaPredicted RBP1.5□□□□□ -2.17
SCN1A-208ENST00000625916 GIT2Q14161 759 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 GPNMBQ14956 572 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 PTGES3Q15185 160 aaKnown RBP1.5□□□□□ -2.17
SCN1A-208ENST00000625916 ACKR1Q16570 336 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 SEL1L2Q5TEA6 688 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 C1orf189Q5VU69 101 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 SIGLEC15Q6ZMC9 328 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 Q6ZRG5 221 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 CYP4V2Q6ZWL3 525 aaPredicted RBP1.5□□□□□ -2.17
SCN1A-208ENST00000625916 MOB2Q70IA6 237 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 SYVN1Q86TM6 617 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 C17orf64Q86WR6 236 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 THNSL1Q8IYQ7 743 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 SIX6OS1Q8N1H7 587 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 DCAF4L2Q8NA75 395 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 FBXO30Q8TB52 745 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 GOLGA5Q8TBA6 731 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 SPATA18Q8TC71 538 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 RASL10BQ96S79 203 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 VPS18Q9P253 973 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 POMT1Q9Y6A1 747 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 GTPBP10A4D1E9 387 aaKnown RBP1.49□□□□□ -2.17
SCN1A-208ENST00000625916 ST8SIA3O43173 380 aa1.49□□□□□ -2.17
SCN1A-208ENST00000625916 TBCAO75347 108 aaKnown RBP1.49□□□□□ -2.17
SCN1A-208ENST00000625916 ALPIP09923 528 aa1.49□□□□□ -2.17
SCN1A-208ENST00000625916 GABRR1P24046 479 aa1.49□□□□□ -2.17
SCN1A-208ENST00000625916 KCNJ1P48048 391 aa1.49□□□□□ -2.17
SCN1A-208ENST00000625916 SLC34A1Q06495 639 aa1.49□□□□□ -2.17
SCN1A-208ENST00000625916 P2RY14Q15391 338 aa1.49□□□□□ -2.17
SCN1A-208ENST00000625916 SPHARQ15513 63 aa1.49□□□□□ -2.17
SCN1A-208ENST00000625916 DCAF4L1Q3SXM0 396 aa1.49□□□□□ -2.17
SCN1A-208ENST00000625916 LRRC38Q5VT99 294 aa1.49□□□□□ -2.17
SCN1A-208ENST00000625916 SHQ1Q6PI26 577 aaKnown RBP1.49□□□□□ -2.17
SCN1A-208ENST00000625916 ERICH1Q86X53 443 aa1.49□□□□□ -2.17
SCN1A-208ENST00000625916 KRTAP13-1Q8IUC0 172 aa1.49□□□□□ -2.17
SCN1A-208ENST00000625916 WDR49Q8IV35 697 aa1.49□□□□□ -2.17
SCN1A-208ENST00000625916 NHLRC2Q8NBF2 726 aa1.49□□□□□ -2.17
SCN1A-208ENST00000625916 UXS1Q8NBZ7 420 aa1.49□□□□□ -2.17
SCN1A-208ENST00000625916 BBS1Q8NFJ9 593 aa1.49□□□□□ -2.17
SCN1A-208ENST00000625916 PRCCQ92733 491 aaPredicted RBP1.49□□□□□ -2.17
SCN1A-208ENST00000625916 FAM162AQ96A26 154 aa1.49□□□□□ -2.17
SCN1A-208ENST00000625916 ULK4Q96C45 1275 aa1.49□□□□□ -2.17
SCN1A-208ENST00000625916 BIRC7Q96CA5 298 aa1.49□□□□□ -2.17
SCN1A-208ENST00000625916 DHTKD1Q96HY7 919 aaPredicted RBP1.49□□□□□ -2.17
SCN1A-208ENST00000625916 PRAM1Q96QH2 718 aa1.49□□□□□ -2.17
SCN1A-208ENST00000625916 PARK7Q99497 189 aaKnown RBP1.49□□□□□ -2.17
SCN1A-208ENST00000625916 ZNF559Q9BR84 538 aa1.49□□□□□ -2.17
SCN1A-208ENST00000625916 CCSER1Q9C0I3 900 aa1.49□□□□□ -2.17
SCN1A-208ENST00000625916 CXXC4Q9H2H0 198 aa1.49□□□□□ -2.17
SCN1A-208ENST00000625916 MRPL17Q9NRX2 175 aaKnown RBP1.49□□□□□ -2.17
SCN1A-208ENST00000625916 TMEM161AQ9NX61 479 aa1.49□□□□□ -2.17
SCN1A-208ENST00000625916 RNF115Q9Y4L5 304 aa1.49□□□□□ -2.17
SCN1A-208ENST00000625916 A0A087X0K7 114 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 ATP6AP2A0A1C7CYW4 349 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 WWP2O00308 870 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 SLC17A2O00624 439 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 SLC30A4O14863 429 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 CHUKO15111 745 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 LCMT2O60294 686 aaKnown RBP1.48□□□□□ -2.17
SCN1A-208ENST00000625916 ATP9AO75110 1047 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 CRCPO75575 148 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 C8orf89P0DMQ9 161 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 CYP11B1P15538 503 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 IFNAR1P17181 557 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 CASTP20810 708 aaKnown RBP1.48□□□□□ -2.17
SCN1A-208ENST00000625916 UCP1P25874 307 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 GABPAQ06546 454 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 ARHGAP1Q07960 439 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 PTK6Q13882 451 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 SBK1Q52WX2 424 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 DDI2Q5TDH0 399 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 TAF3Q5VWG9 929 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 PODNL1Q6PEZ8 512 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 CLEC4GQ6UXB4 293 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 IL34Q6ZMJ4 242 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 MSANTD1Q6ZTZ1 278 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 PRSS48Q7RTY5 328 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 AQP12AQ8IXF9 295 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 TMEM61Q8N0U2 210 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 THEM5Q8N1Q8 247 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 TRPV3Q8NET8 790 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 OR10H4Q8NGA5 316 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 DEPDC1BQ8WUY9 529 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 CDKN2AIPNLQ96HQ2 116 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 C19orf43Q9BQ61 176 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 Q9H3A6 140 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 SRD5A3Q9H8P0 318 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 GDF3Q9NR23 364 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 DNAJC11Q9NVH1 559 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 SLC2A6Q9UGQ3 507 aa1.48□□□□□ -2.17
SCN1A-208ENST00000625916 ARMCX3Q9UH62 379 aaPredicted RBP1.48□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms