RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 LRIF1Q5T3J3 769 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 MTSS1LQ765P7 747 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 AMIGO1Q86WK6 493 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 LAX1Q8IWV1 398 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 FAM9CQ8IZT9 166 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 LINC01555Q8NAE3 123 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 GFM1Q96RP9 751 aaKnown RBP13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 AIF1LQ9BQI0 150 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 OR52A5Q9H2C5 316 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 CXorf36Q9H7Y0 433 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 ABCB9Q9NP78 766 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 DZANK1Q9NVP4 752 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 RPS6KA6Q9UK32 745 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 SLC27A6Q9Y2P4 619 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 ARHGAP33O14559 1287 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 RNGTTO60942 597 aaKnown RBP13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 TSPAN9O75954 239 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 EML2O95834 649 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 NTSR1P30989 418 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 UGT2B10P36537 528 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 LRRC32Q14392 662 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 EIF4HQ15056 248 aaKnown RBP13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 KDM4DQ6B0I6 523 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 DCUN1D3Q8IWE4 304 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 TMIEQ8NEW7 156 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 RASSF5Q8WWW0 418 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 CCDC115Q96NT0 180 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 SLC17A9Q9BYT1 436 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 BTBD1Q9H0C5 482 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 CACYBPQ9HB71 228 aaKnown RBP13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 IL1RAPQ9NPH3 570 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 SLAMF7Q9NQ25 335 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 MALT1Q9UDY8 824 aa13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 ZFR2Q9UPR6 939 aaKnown RBP13.7□□□□□ -0.22
SHROOM1-208ENST00000617339 H3BN98 237 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 ADORA3P0DMS8 318 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 ACSL1P33121 698 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 ARL4DP49703 201 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 RGS6P49758 472 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 KEAP1Q14145 624 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 GCNT6Q5T4J0 391 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 AGBL4Q5VU57 503 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 TSPYL5Q86VY4 417 aaPredicted RBP13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 FAM109AQ8N4B1 249 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 SP7Q8TDD2 431 aaPredicted RBP13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 IPCEF1Q8WWN9 437 aaPredicted RBP13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 SLC7A6Q92536 515 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 GBF1Q92538 1859 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 TMCO6Q96DC7 493 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 MAGEB10Q96LZ2 347 aaPredicted RBP13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 GPR174Q9BXC1 333 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 NDOR1Q9UHB4 597 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 NDRG4Q9ULP0 352 aaKnown RBP13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 SLC28A2O43868 658 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 TMPRSS11DO60235 418 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 NOS1APO75052 506 aaPredicted RBP13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 RPN2P04844 631 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 OR12D1P0DN82 309 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 ALDH6A1Q02252 535 aaKnown RBP13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 YIF1BQ5BJH7 314 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 ANXA8L1Q5VT79 327 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 FAM131AQ6UXB0 335 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 TMPRSS11AQ6ZMR5 421 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 FAM46DQ8NEK8 389 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 FBLIM1Q8WUP2 373 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 DEDD2Q8WXF8 326 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 MYDGFQ969H8 173 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 COL21A1Q96P44 957 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 SMURF1Q9HCE7 757 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 FGF22Q9HCT0 170 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 HSPB11Q9Y547 144 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 ARHGEF17Q96PE2 2063 aaPredicted RBP13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 TRBC2A0A5B9 178 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 HMX3A6NHT5 357 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 DNAJA1P31689 397 aaKnown RBP13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 GZMMP51124 257 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 LASP1Q14847 261 aaKnown RBP13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 EXOC3L2Q2M3D2 409 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 PROX2Q3B8N5 592 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 VN1R5Q7Z5H4 357 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 KIAA0907Q7Z7F0 614 aaPredicted RBP13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 ZNF605Q86T29 641 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 NRSN1Q8IZ57 195 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 KAT2AQ92830 837 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 PDXPQ96GD0 296 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 SLC7A5P2Q9GIP4 190 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 C11orf16Q9NQ32 467 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 STARD5Q9NSY2 213 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 TAAR2Q9P1P5 351 aa13.69□□□□□ -0.22
SHROOM1-208ENST00000617339 A8MUA0 341 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 RETP07949 1114 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 FURINP09958 794 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 MYL9P24844 172 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 ACADLP28330 430 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 CXCR4P61073 352 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 LSM11P83369 360 aaKnown RBP eCLIP13.68□□□□□ -0.228e-8■□□□□ 11
SHROOM1-208ENST00000617339 HYAL1Q12794 435 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 ZC3H12BQ5HYM0 836 aaKnown RBP13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 BCDIN3DQ7Z5W3 292 aaKnown RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms