RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 MFSD12Q6NUT3 480 aa13.33□□□□□ -0.28
USP39-220ENST00000613444 QSOX2Q6ZRP7 698 aa13.33□□□□□ -0.28
USP39-220ENST00000613444 EID3Q8N140 333 aa13.33□□□□□ -0.28
USP39-220ENST00000613444 TMEM102Q8N9M5 508 aaPredicted RBP13.33□□□□□ -0.28
USP39-220ENST00000613444 PMEPA1Q969W9 287 aa13.33□□□□□ -0.28
USP39-220ENST00000613444 OTUB1Q96FW1 271 aaPredicted RBP13.33□□□□□ -0.28
USP39-220ENST00000613444 MS4A4EQ96PG1 132 aa13.33□□□□□ -0.28
USP39-220ENST00000613444 YIPF2Q9BWQ6 316 aa13.33□□□□□ -0.28
USP39-220ENST00000613444 TGIF2Q9GZN2 237 aa13.33□□□□□ -0.28
USP39-220ENST00000613444 MKKSQ9NPJ1 570 aaPredicted RBP13.33□□□□□ -0.28
USP39-220ENST00000613444 C6orf203Q9P0P8 240 aaPredicted RBP13.33□□□□□ -0.28
USP39-220ENST00000613444 STOML1Q9UBI4 398 aa13.33□□□□□ -0.28
USP39-220ENST00000613444 CTSFQ9UBX1 484 aa13.33□□□□□ -0.28
USP39-220ENST00000613444 KCNE3Q9Y6H6 103 aa13.33□□□□□ -0.28
USP39-220ENST00000613444 RECKO95980 971 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 AQP1P29972 269 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 KHKP50053 298 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 CLDN6P56747 220 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 MAP7Q14244 749 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 NKAIN1Q4KMZ8 207 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 LRRC23Q53EV4 343 aaPredicted RBP13.32□□□□□ -0.28
USP39-220ENST00000613444 STPG1Q5TH74 334 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 HMBOX1Q6NT76 420 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 CBLL1Q75N03 491 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 LAPTM4BQ86VI4 370 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 TMEM19Q96HH6 336 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 OR7D2Q96RA2 312 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 SEPHS2Q99611 448 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 ACTRT3Q9BYD9 372 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 EQTNQ9NQ60 294 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 PCDHGA1Q9Y5H4 931 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 HRKO00198 91 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 CASQ2O14958 399 aaPredicted RBP13.32□□□□□ -0.28
USP39-220ENST00000613444 POLR1CO15160 346 aaPredicted RBP13.32□□□□□ -0.28
USP39-220ENST00000613444 ASNA1O43681 348 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 OR10H2O60403 315 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 TIPRLO75663 272 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 ZNF28P17035 718 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 MAP3K8P41279 467 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 SERTAD2Q14140 314 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 CCDC157Q569K6 752 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 CRB2Q5IJ48 1285 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 TBCELQ5QJ74 424 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 REEP3Q6NUK4 255 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 WDR53Q7Z5U6 358 aaPredicted RBP13.32□□□□□ -0.28
USP39-220ENST00000613444 TMEM151BQ8IW70 566 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 VWA5B2Q8N398 1253 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 OR10Q1Q8NGQ4 319 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 LRTOMTQ8WZ04 291 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 HOXB13Q92826 284 aaPredicted RBP13.32□□□□□ -0.28
USP39-220ENST00000613444 RIT1Q92963 219 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 TSLPQ969D9 159 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 CLIP3Q96DZ5 547 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 RBM18Q96H35 190 aaKnown RBP13.32□□□□□ -0.28
USP39-220ENST00000613444 PTCHD1Q96NR3 888 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 RSPO3Q9BXY4 272 aaPredicted RBP13.32□□□□□ -0.28
USP39-220ENST00000613444 SLC7A5P2Q9GIP4 190 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 IRF2BPLQ9H1B7 796 aa13.32□□□□□ -0.28
USP39-220ENST00000613444 THUMPD1Q9NXG2 353 aaKnown RBP13.32□□□□□ -0.28
USP39-220ENST00000613444 ZFHX2Q9C0A1 2572 aaPredicted RBP13.31□□□□□ -0.28
USP39-220ENST00000613444 B4E171 279 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 SEMG1P04279 462 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 CAPNS1P04632 268 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 BCHEP06276 602 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 HBQ1P09105 142 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 GALNSP34059 522 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 TSPAN7P41732 249 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 TXNL4AP83876 142 aaKnown RBP13.31□□□□□ -0.28
USP39-220ENST00000613444 BIKQ13323 160 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 EXOSC7Q15024 291 aaKnown RBP13.31□□□□□ -0.28
USP39-220ENST00000613444 SYPL1Q16563 259 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 LCN10Q6JVE6 187 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 CDC73Q6P1J9 531 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 LRRC74BQ6ZQY2 392 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 EIF3MQ7L2H7 374 aaKnown RBP13.31□□□□□ -0.28
USP39-220ENST00000613444 ERMP1Q7Z2K6 904 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 GLRX5Q86SX6 157 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 SLC30A8Q8IWU4 369 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 GALNT12Q8IXK2 581 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 SLC16A11Q8NCK7 471 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 XAGE5Q8WWM1 108 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 TAMM41Q96BW9 452 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 SLC35A4Q96G79 324 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 PYURFQ96I23 114 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 DGAT2Q96PD7 388 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 CHID1Q9BWS9 393 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 RUBCNLQ9H714 662 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 SAMD4AQ9UPU9 718 aaKnown RBP13.31□□□□□ -0.28
USP39-220ENST00000613444 HNRNPRO43390 633 aaKnown RBP13.31□□□□□ -0.28
USP39-220ENST00000613444 PGM3O95394 542 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 RAP2AP10114 183 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 CLCN2P51788 898 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 FOXL2P58012 376 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 DCDP81605 110 aaKnown RBP13.31□□□□□ -0.28
USP39-220ENST00000613444 ISXQ2M1V0 245 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 MINDY4Q4G0A6 757 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 RPS26P11Q5JNZ5 115 aaPredicted RBP13.31□□□□□ -0.28
USP39-220ENST00000613444 INTS11Q5TA45 600 aaKnown RBP13.31□□□□□ -0.28
USP39-220ENST00000613444 ANKFN1Q8N957 763 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 RNF145Q96MT1 663 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms