RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 CDK9P50750 372 aaKnown RBP13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 SSR4P51571 173 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 NR0B1P51843 470 aaKnown RBP13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 WNT3P56703 355 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 PMP22Q01453 160 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 ZNF791Q3KP31 576 aaPredicted RBP13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 ZNF766Q5HY98 468 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 DESI1Q6ICB0 168 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 OGFOD2Q6N063 350 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 EPGNQ6UW88 154 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 TMEM107Q6UX40 140 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 RGS9BPQ6ZS82 235 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 ZNF605Q86T29 641 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 SAMD14Q8IZD0 417 aaPredicted RBP13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 FAM9CQ8IZT9 166 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 KIRREL3Q8IZU9 778 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 MTERF3Q96E29 417 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 ELP4Q96EB1 424 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 SCMH1Q96GD3 660 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 MAGED4Q96JG8 741 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 MARK4Q96L34 752 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 EBF4Q9BQW3 602 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 ITPAQ9BY32 194 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 GIMAP4Q9NUV9 329 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 ASF1BQ9NVP2 202 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 NOP53Q9NZM5 478 aaKnown RBP13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 ABI3Q9P2A4 366 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 GPR45Q9Y5Y3 372 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 ZNF462Q96JM2 2506 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 C9JVG2 144 aa13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 SLCO1B7G3V0H7 640 aa13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 UPK1AO00322 258 aa13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 PLOD2O00469 737 aa13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 FCHO1O14526 889 aa13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 SCN2BO60939 215 aa13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 VPS4BO75351 444 aa13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 CYB561P49447 251 aa13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 IDH3AP50213 366 aa13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 NME5P56597 212 aa13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 C21orf58P58505 322 aa13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 UFM1P61960 85 aa13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 MAD2L1Q13257 205 aaPredicted RBP13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 NNATQ16517 81 aa13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 LSM12Q3MHD2 195 aaKnown RBP13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 SLC25A25Q6KCM7 469 aa13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 RPUSD3Q6P087 351 aaKnown RBP13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 NPSR1Q6W5P4 371 aa13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 SLC29A4Q7RTT9 530 aa13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 WDR53Q7Z5U6 358 aaPredicted RBP13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 PRR22Q8IZ63 422 aa13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 TMEM156Q8N614 296 aa13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 ACTRT2Q8TDY3 377 aa13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 THOC1Q96FV9 657 aaKnown RBP13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 BARD1Q99728 777 aaKnown RBP13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 SIRT3Q9NTG7 399 aaPredicted RBP13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 DEPPQ9NTK1 212 aa13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 AIG1Q9NVV5 245 aa13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 C19orf53Q9UNZ5 99 aaPredicted RBP13.12□□□□□ -0.31
SHKBP1-217ENST00000598558 COL6A6A6NMZ7 2263 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 CPAMD8Q8IZJ3 1885 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 A0A0G2JMM0 328 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 A0A1W2PPB8 328 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 A0A1W2PRS3 328 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 PINLYPA6NC86 204 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 TRPC5OSA6NMA1 111 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 KIR3DP1A8MWS1 328 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 TCP11X1B4DZS4 312 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 SLC25A12O75746 678 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 PSMG1O95456 288 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 PRPS1L1P21108 318 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 NTSP30990 170 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 HPCAL1P37235 193 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 CORO7P57737 925 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 HSPB3Q12988 150 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 RNFT1Q5M7Z0 435 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 CPTPQ5TA50 214 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 NXNQ6DKJ4 435 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 GALNTL5Q7Z4T8 443 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 R3HCC1LQ7Z5L2 792 aaKnown RBP13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 SPATA19Q7Z5L4 167 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 LRRC34Q8IZ02 419 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 CYP4Z2PQ8N1L4 340 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 OR2L13Q8N349 312 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 CPT1CQ8TCG5 803 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 GRHL3Q8TE85 626 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 ASB15Q8WXK1 588 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 TP53INP1Q96A56 240 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 MIB2Q96AX9 1013 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 VSTM2LQ96N03 204 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 FOLH1BQ9HBA9 442 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 SH2D2AQ9NP31 389 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 ACSS1Q9NUB1 689 aaPredicted RBP13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 GPR55Q9Y2T6 319 aaPredicted RBP13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 COPG1Q9Y678 874 aaKnown RBP13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 SPTA1P02549 2419 aa13.11□□□□□ -0.31
SHKBP1-217ENST00000598558 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 A0A087WV62 115 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 A0A1W2PRB8 838 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 A8MVJ9 347 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms