RNA–Protein interactions for RNA: ENST00000585163.5

CDK5RAP3-237, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,519 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-237ENST00000585163 TMEM203Q969S6 136 aa13.4□□□□□ -0.26
CDK5RAP3-237ENST00000585163 NXPE3Q969Y0 559 aa13.4□□□□□ -0.26
CDK5RAP3-237ENST00000585163 CLIP3Q96DZ5 547 aa13.4□□□□□ -0.26
CDK5RAP3-237ENST00000585163 COX14Q96I36 57 aa13.4□□□□□ -0.26
CDK5RAP3-237ENST00000585163 AMDHD1Q96NU7 426 aa13.4□□□□□ -0.26
CDK5RAP3-237ENST00000585163 LRRC3BQ96PB8 259 aa13.4□□□□□ -0.26
CDK5RAP3-237ENST00000585163 PHOX2BQ99453 314 aa13.4□□□□□ -0.26
CDK5RAP3-237ENST00000585163 KCNK12Q9HB15 430 aa13.4□□□□□ -0.26
CDK5RAP3-237ENST00000585163 BCL2L10Q9HD36 194 aa13.4□□□□□ -0.26
CDK5RAP3-237ENST00000585163 TRPC4Q9UBN4 977 aa13.4□□□□□ -0.26
CDK5RAP3-237ENST00000585163 FBXW2Q9UKT8 454 aa13.4□□□□□ -0.26
CDK5RAP3-237ENST00000585163 SLC27A6Q9Y2P4 619 aa13.4□□□□□ -0.26
CDK5RAP3-237ENST00000585163 SPIN1Q9Y657 262 aaPredicted RBP13.4□□□□□ -0.26
CDK5RAP3-237ENST00000585163 A0A1W2PPV9 198 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 A0A1W2PQL4 384 aaPredicted RBP13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 MEIOCA2RUB1 952 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 FAM172BPA6NC97 362 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 PRRT4C9JH25 899 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 KIAA0355O15063 1070 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 SEC14L5O43304 696 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 RPN2P04844 631 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 CSF2RAP15509 400 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 MYL12AP19105 171 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 RPS5P46782 204 aaKnown RBP13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 SLC9A3P48764 834 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 MNX1P50219 401 aaPredicted RBP13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 SMSP52788 366 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 COL4A3Q01955 1670 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 ARHGEF6Q15052 776 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 HNRNPA1L2Q32P51 320 aaKnown RBP13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 PLK5Q496M5 336 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 HSDL2Q6YN16 418 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 NANOGNBQ7Z5D8 188 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 LAPTM4BQ86VI4 370 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 GATAD2AQ86YP4 633 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 ZNF296Q8WUU4 475 aaPredicted RBP13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 PRRC1Q96M27 445 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 MED18Q9BUE0 208 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 SPATA5L1Q9BVQ7 753 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 ZCCHC3Q9NUD5 404 aaKnown RBP13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 CARD8Q9Y2G2 431 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 CKAP5Q14008 2032 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 A0A0A6YYD5 115 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 TMEM129A0AVI4 362 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 OR1F1O43749 312 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 FKTNO75072 461 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 CLEC2LP0C7M8 214 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 NR2F6P10588 404 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 ACP2P11117 423 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 GSTM3P21266 225 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 GPC1P35052 558 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 TRA2BP62995 288 aaKnown RBP13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 RAB40BQ12829 278 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 TAB1Q15750 504 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 SNAPC1Q16533 368 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 DEFB115Q30KQ5 88 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 TMEM52BQ4KMG9 183 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 OR4C11Q6IEV9 310 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 OLIG3Q7RTU3 272 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 TP53I13Q8NBR0 393 aaPredicted RBP13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 BBS10Q8TAM1 723 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 TM9SF4Q92544 642 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 KCTD7Q96MP8 289 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 SLC22A4Q9H015 551 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 MARCH7Q9H992 704 aa13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 FGF20Q9NP95 211 aaPredicted RBP13.39□□□□□ -0.27
CDK5RAP3-237ENST00000585163 EDDM13A0A1B0GTR0 161 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 FABP12A6NFH5 140 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 PRODHO43272 600 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 EFCAB14O75071 495 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 CSF3P09919 207 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 TSPAN19P0C672 248 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 TRAPPC2P0DI81 140 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 TRAPPC2BP0DI82 140 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 DRD2P14416 443 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 ITGB8P26012 769 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 SDC2P34741 201 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 MAN2A2P49641 1150 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 TPBGQ13641 420 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 ELAVL3Q14576 367 aaKnown RBP13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 ZFP69Q49AA0 526 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 DDI2Q5TDH0 399 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 NDUFAF5Q5TEU4 345 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 OR2G6Q5TZ20 316 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 FAM46CQ5VWP2 391 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 METRNLQ641Q3 311 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 KIF18BQ86Y91 864 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 MRPL43Q8N983 215 aaKnown RBP13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 GDPD1Q8N9F7 314 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 DIRAS2Q96HU8 199 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 DPH7Q9BTV6 452 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 PLA2G12AQ9BZM1 189 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 RNF208Q9H0X6 261 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 TMEM245Q9H330 911 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 DDX28Q9NUL7 540 aaKnown RBP13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 SF3B6Q9Y3B4 125 aaKnown RBP13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 LINC00854A0A1B0GVQ3 168 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 HMX3A6NHT5 357 aa13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 HOXC11O43248 304 aaPredicted RBP13.38□□□□□ -0.27
CDK5RAP3-237ENST00000585163 LCMT2O60294 686 aaKnown RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms