RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	ETHE1	O95571	254 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	HNRNPA1	P09651	372 aa	Known RBP eCLIP	11	□□□□□ -0.65	8e-6	■□□□□ 10.1
CDK5RAP3-231	ENST00000584063	ID4	P47928	161 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	CLDN8	P56748	225 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	TOP3A	Q13472	1001 aa	Predicted RBP	11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	DOC2B	Q14184	412 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ZNF77	Q15935	545 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	UGT8	Q16880	541 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ARSI	Q5FYB1	569 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	FAM76B	Q5HYJ3	339 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	COL13A1	Q5TAT6	717 aa	Predicted RBP	11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ATG9B	Q674R7	924 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	DESI1	Q6ICB0	168 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063		Q6ZVL8	140 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ZNF765	Q7L2R6	523 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	TRIM46	Q7Z4K8	759 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ADIPOR2	Q86V24	386 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	CALHM3	Q86XJ0	350 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	PTOV1	Q86YD1	416 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	VN1R2	Q8NFZ6	395 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	APOL4	Q9BPW4	351 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ERVMER34-1	Q9H9K5	563 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	TNRC18	O15417	2968 aa	Predicted RBP	11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	WDR87	Q6ZQQ6	2873 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	KCNE1B	A0A087WTH5	132 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	HMX3	A6NHT5	357 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	KPNA3	O00505	521 aa	Predicted RBP	11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ERN1	O75460	977 aa	Known RBP	11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	LEFTY1	O75610	366 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	EBLN1	P0CF75	366 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	AOAH	P28039	575 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	FEN1	P39748	380 aa	Known RBP	11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	CRAT	P43155	626 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	SERPINB10	P48595	397 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	CAMLG	P49069	296 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	CRYBA2	P53672	197 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	CDH12	P55289	794 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ZP2	Q05996	745 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ILF2	Q12905	390 aa	Known RBP	11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	VMAC	Q2NL98	169 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	COX20	Q5RI15	118 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	PTCHD4	Q6ZW05	846 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	HSD11B1L	Q7Z5J1	315 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	HMGN2P46	Q86SG4	172 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	LYSMD2	Q8IV50	215 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ZZZ3	Q8IYH5	903 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	NAGS	Q8N159	534 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	C2orf73	Q8N5S3	287 aa	Predicted RBP	11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	CELF5	Q8N6W0	485 aa	Known RBP	11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	DMRTB1	Q96MA1	342 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	NIPSNAP1	Q9BPW8	284 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	MRPL37	Q9BZE1	423 aa	Known RBP	11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	RMND5A	Q9H871	391 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	TRIM39	Q9HCM9	518 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	FZD4	Q9ULV1	537 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	B3GNT3	Q9Y2A9	372 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	BOLA1	Q9Y3E2	137 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	CKAP5	Q14008	2032 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	SCN8A	Q9UQD0	1980 aa		11	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	hCG_1809904	A0A1W2PP81	198 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063		A0A1W2PPE2	198 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063		A0A1W2PR64	198 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	MAGEB17	A8MXT2	336 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ZNF879	B4DU55	563 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063		E7EQ34	232 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	C5orf67	F2Z3F1	127 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	CTDSP2	O14595	271 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	PTH	P01270	115 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ADRA2A	P08913	450 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	STAG3L3	P0CL85	134 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ADH5	P11766	374 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	CXCR2	P25025	360 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	BDKRB1	P46663	353 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	CCR4	P51679	360 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	EPHA5	P54756	1037 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	MEF2A	Q02078	507 aa	Predicted RBP	10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ABHD18	Q0P651	414 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	MAD2L1	Q13257	205 aa	Predicted RBP	10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	FAM214A	Q32MH5	1076 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	BCDIN3D	Q7Z5W3	292 aa	Known RBP	10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	SLC5A8	Q8N695	610 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	MINDY2	Q8NBR6	621 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	SETD9	Q8NE22	299 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	RHOXF1	Q8NHV9	184 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	BBS10	Q8TAM1	723 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	RDH12	Q96NR8	316 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	SLC26A1	Q9H2B4	701 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	SLC32A1	Q9H598	525 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	EXOSC4	Q9NPD3	245 aa	Known RBP	10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ZDHHC3	Q9NYG2	299 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	SAMD4A	Q9UPU9	718 aa	Known RBP	10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	PCDHGA6	Q9Y5G7	932 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	MYO10	Q9HD67	2058 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	XKRY2	A2RUG3	117 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	OR2A25	A4D2G3	310 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	TBC1D3B	A6NDS4	549 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063		H3BM21	787 aa		10.99	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 24 ms