RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 EPB41L4BQ9H329 900 aa18.78■□□□□ 0.6
SHMT1-209ENST00000582653 VPS29Q9UBQ0 182 aa18.78■□□□□ 0.6
SHMT1-209ENST00000582653 TBK1Q9UHD2 729 aa18.78■□□□□ 0.6
SHMT1-209ENST00000582653 NCKAP5O14513 1909 aa18.77■□□□□ 0.6
SHMT1-209ENST00000582653 TP53I11O14683 189 aa18.77■□□□□ 0.6
SHMT1-209ENST00000582653 PYGBP11216 843 aa18.77■□□□□ 0.6
SHMT1-209ENST00000582653 IMPDH1P20839 514 aa18.77■□□□□ 0.6
SHMT1-209ENST00000582653 ATP5F1P24539 256 aaPredicted RBP18.77■□□□□ 0.6
SHMT1-209ENST00000582653 SOX18P35713 384 aa18.77■□□□□ 0.6
SHMT1-209ENST00000582653 ADH7P40394 386 aa18.77■□□□□ 0.6
SHMT1-209ENST00000582653 ALDH9A1P49189 494 aa18.77■□□□□ 0.6
SHMT1-209ENST00000582653 EXOSC7Q15024 291 aaKnown RBP18.77■□□□□ 0.6
SHMT1-209ENST00000582653 TBCELQ5QJ74 424 aa18.77■□□□□ 0.6
SHMT1-209ENST00000582653 C6orf163Q5TEZ5 329 aa18.77■□□□□ 0.6
SHMT1-209ENST00000582653 TMEM198Q66K66 360 aa18.77■□□□□ 0.6
SHMT1-209ENST00000582653 SPNS3Q6ZMD2 512 aa18.77■□□□□ 0.6
SHMT1-209ENST00000582653 VWA5B2Q8N398 1253 aa18.77■□□□□ 0.6
SHMT1-209ENST00000582653 LRRN4CLQ8ND94 238 aa18.77■□□□□ 0.6
SHMT1-209ENST00000582653 OR7G1Q8NGA0 311 aa18.77■□□□□ 0.6
SHMT1-209ENST00000582653 NEIL3Q8TAT5 605 aa18.77■□□□□ 0.6
SHMT1-209ENST00000582653 ZNF559Q9BR84 538 aa18.77■□□□□ 0.6
SHMT1-209ENST00000582653 NMRK1Q9NWW6 199 aa18.77■□□□□ 0.6
SHMT1-209ENST00000582653 MAT2BQ9NZL9 334 aa18.77■□□□□ 0.6
SHMT1-209ENST00000582653 BCAP29Q9UHQ4 241 aa18.77■□□□□ 0.6
SHMT1-209ENST00000582653 TEP1Q99973 2627 aaKnown RBP18.77■□□□□ 0.6
SHMT1-209ENST00000582653 POLQO75417 2590 aa18.77■□□□□ 0.59
SHMT1-209ENST00000582653 GOLGA6L10A6NI86 522 aa18.76■□□□□ 0.59
SHMT1-209ENST00000582653 TRIM3O75382 744 aaPredicted RBP18.76■□□□□ 0.59
SHMT1-209ENST00000582653 CSNK2A2P19784 350 aaPredicted RBP18.76■□□□□ 0.59
SHMT1-209ENST00000582653 GPX3P22352 226 aa18.76■□□□□ 0.59
SHMT1-209ENST00000582653 HTR6P50406 440 aa18.76■□□□□ 0.59
SHMT1-209ENST00000582653 MAP4K2Q12851 820 aa18.76■□□□□ 0.59
SHMT1-209ENST00000582653 DUSP8Q13202 625 aa18.76■□□□□ 0.59
SHMT1-209ENST00000582653 RASA2Q15283 850 aa18.76■□□□□ 0.59
SHMT1-209ENST00000582653 RPS6KA2Q15349 733 aa18.76■□□□□ 0.59
SHMT1-209ENST00000582653 LTB4RQ15722 352 aa18.76■□□□□ 0.59
SHMT1-209ENST00000582653 NNATQ16517 81 aa18.76■□□□□ 0.59
SHMT1-209ENST00000582653 RIPPLY2Q5TAB7 128 aa18.76■□□□□ 0.59
SHMT1-209ENST00000582653 DESI1Q6ICB0 168 aa18.76■□□□□ 0.59
SHMT1-209ENST00000582653 GPRIN3Q6ZVF9 776 aa18.76■□□□□ 0.59
SHMT1-209ENST00000582653 METTL6Q8TCB7 284 aa18.76■□□□□ 0.59
SHMT1-209ENST00000582653 SPPL2AQ8TCT8 520 aa18.76■□□□□ 0.59
SHMT1-209ENST00000582653 KLHL29Q96CT2 875 aa18.76■□□□□ 0.59
SHMT1-209ENST00000582653 CNRIP1Q96F85 164 aaPredicted RBP18.76■□□□□ 0.59
SHMT1-209ENST00000582653 KCNA7Q96RP8 456 aa18.76■□□□□ 0.59
SHMT1-209ENST00000582653 ZNF382Q96SR6 550 aa18.76■□□□□ 0.59
SHMT1-209ENST00000582653 SECISBP2Q96T21 854 aaKnown RBP18.76■□□□□ 0.59
SHMT1-209ENST00000582653 NXF5Q9H1B4 397 aaKnown RBP18.76■□□□□ 0.59
SHMT1-209ENST00000582653 HEY2Q9UBP5 337 aa18.76■□□□□ 0.59
SHMT1-209ENST00000582653 TIMM22Q9Y584 194 aa18.76■□□□□ 0.59
SHMT1-209ENST00000582653 CELSR1Q9NYQ6 3014 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 A0A1W2PPM1 405 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 AHRRA9YTQ3 701 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 SNX4O95219 450 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 KRT6AP02538 564 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 KRT6BP04259 564 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 ATP1B1P05026 303 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 GDF1P27539 372 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 HMOX2P30519 316 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 KRT6CP48668 564 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 PRKAA2P54646 552 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 NRG3P56975 720 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 RAE1P78406 368 aaKnown RBP18.75■□□□□ 0.59
SHMT1-209ENST00000582653 SLC25A35Q3KQZ1 300 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 TRMT12Q53H54 448 aaKnown RBP18.75■□□□□ 0.59
SHMT1-209ENST00000582653 SCIMPQ6UWF3 145 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 LCA5Q86VQ0 697 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 LIX1Q8N485 282 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 MZB1Q8WU39 189 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 ZNF597Q96LX8 424 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 ZNF681Q96N22 645 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 RILPQ96NA2 401 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 GNRHR2Q96P88 292 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 ITPAQ9BY32 194 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 ANGPTL4Q9BY76 406 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 ACPTQ9BZG2 426 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 PSMC3IPQ9P2W1 217 aaPredicted RBP18.75■□□□□ 0.59
SHMT1-209ENST00000582653 B4GALT7Q9UBV7 327 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 ZNF639Q9UID6 485 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 PSME2Q9UL46 239 aa18.75■□□□□ 0.59
SHMT1-209ENST00000582653 ULK1O75385 1050 aa18.74■□□□□ 0.59
SHMT1-209ENST00000582653 ESRRBO95718 433 aa18.74■□□□□ 0.59
SHMT1-209ENST00000582653 HSD3B1P14060 373 aa18.74■□□□□ 0.59
SHMT1-209ENST00000582653 HSD3B2P26439 372 aa18.74■□□□□ 0.59
SHMT1-209ENST00000582653 ABCD3P28288 659 aa18.74■□□□□ 0.59
SHMT1-209ENST00000582653 CASP3P42574 277 aa18.74■□□□□ 0.59
SHMT1-209ENST00000582653 DLX5P56178 289 aa18.74■□□□□ 0.59
SHMT1-209ENST00000582653 TRA2BP62995 288 aaKnown RBP18.74■□□□□ 0.59
SHMT1-209ENST00000582653 HMGCS1Q01581 520 aa18.74■□□□□ 0.59
SHMT1-209ENST00000582653 CSTF3Q12996 717 aaKnown RBP18.74■□□□□ 0.59
SHMT1-209ENST00000582653 FNDC7Q5VTL7 733 aa18.74■□□□□ 0.59
SHMT1-209ENST00000582653 SLC22A9Q8IVM8 553 aa18.74■□□□□ 0.59
SHMT1-209ENST00000582653 ULK2Q8IYT8 1036 aa18.74■□□□□ 0.59
SHMT1-209ENST00000582653 C17orf47Q8NEP4 570 aa18.74■□□□□ 0.59
SHMT1-209ENST00000582653 ACMSDQ8TDX5 336 aa18.74■□□□□ 0.59
SHMT1-209ENST00000582653 L3HYPDHQ96EM0 354 aa18.74■□□□□ 0.59
SHMT1-209ENST00000582653 APIPQ96GX9 242 aa18.74■□□□□ 0.59
SHMT1-209ENST00000582653 FAIM2Q9BWQ8 316 aa18.74■□□□□ 0.59
SHMT1-209ENST00000582653 EMCNQ9ULC0 261 aa18.74■□□□□ 0.59
SHMT1-209ENST00000582653 DLGAP4Q9Y2H0 992 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms