RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 FAM220BPB1ANY3 271 aa15.05■□□□□ -0
SS18-211ENST00000578954 C17orf105B2RV13 164 aa15.05■□□□□ -0
SS18-211ENST00000578954 COQ9O75208 318 aa15.05■□□□□ -0
SS18-211ENST00000578954 CLPSP04118 112 aa15.05■□□□□ -0
SS18-211ENST00000578954 IGKV3-11P04433 115 aa15.05■□□□□ -0
SS18-211ENST00000578954 NQO1P15559 274 aaKnown RBP15.05■□□□□ -0
SS18-211ENST00000578954 FOLR3P41439 243 aa15.05■□□□□ -0
SS18-211ENST00000578954 GSK3BP49841 420 aa15.05■□□□□ -0
SS18-211ENST00000578954 LIPEQ05469 1076 aa15.05■□□□□ -0
SS18-211ENST00000578954 DUSP8Q13202 625 aa15.05■□□□□ -0
SS18-211ENST00000578954 TP53BP2Q13625 1128 aa15.05■□□□□ -0
SS18-211ENST00000578954 C6orf163Q5TEZ5 329 aa15.05■□□□□ -0
SS18-211ENST00000578954 ZCCHC12Q6PEW1 402 aa15.05■□□□□ -0
SS18-211ENST00000578954 RNF130Q86XS8 419 aa15.05■□□□□ -0
SS18-211ENST00000578954 FBXW8Q8N3Y1 598 aa15.05■□□□□ -0
SS18-211ENST00000578954 OR7G1Q8NGA0 311 aa15.05■□□□□ -0
SS18-211ENST00000578954 DAZLQ92904 295 aaKnown RBP15.05■□□□□ -0
SS18-211ENST00000578954 NKD1Q969G9 470 aa15.05■□□□□ -0
SS18-211ENST00000578954 NACC2Q96BF6 587 aa15.05■□□□□ -0
SS18-211ENST00000578954 NXPE2Q96DL1 559 aa15.05■□□□□ -0
SS18-211ENST00000578954 FAM122AQ96E09 287 aa15.05■□□□□ -0
SS18-211ENST00000578954 SLC35G5Q96KT7 338 aa15.05■□□□□ -0
SS18-211ENST00000578954 ART5Q96L15 291 aa15.05■□□□□ -0
SS18-211ENST00000578954 WDR77Q9BQA1 342 aaPredicted RBP15.05■□□□□ -0
SS18-211ENST00000578954 TMEM121BQ9BXQ6 578 aaPredicted RBP15.05■□□□□ -0
SS18-211ENST00000578954 SERHL2Q9H4I8 314 aa15.05■□□□□ -0
SS18-211ENST00000578954 ALG2Q9H553 416 aa15.05■□□□□ -0
SS18-211ENST00000578954 PNO1Q9NRX1 252 aaKnown RBP15.05■□□□□ -0
SS18-211ENST00000578954 TCFL5Q9UL49 500 aa15.05■□□□□ -0
SS18-211ENST00000578954 SEC23IPQ9Y6Y8 1000 aaKnown RBP15.05■□□□□ -0
SS18-211ENST00000578954 ASNA1O43681 348 aa15.04■□□□□ -0
SS18-211ENST00000578954 DYRK3O43781 588 aa15.04■□□□□ -0
SS18-211ENST00000578954 TNFRSF21O75509 655 aa15.04■□□□□ -0
SS18-211ENST00000578954 DDAH2O95865 285 aa15.04■□□□□ -0
SS18-211ENST00000578954 HMGN2P05204 90 aaKnown RBP15.04■□□□□ -0
SS18-211ENST00000578954 LIPCP11150 499 aa15.04■□□□□ -0
SS18-211ENST00000578954 MMP11P24347 488 aa15.04■□□□□ -0
SS18-211ENST00000578954 MAP3K8P41279 467 aa15.04■□□□□ -0
SS18-211ENST00000578954 MAN2A2P49641 1150 aa15.04■□□□□ -0
SS18-211ENST00000578954 GPR143P51810 404 aa15.04■□□□□ -0
SS18-211ENST00000578954 OR4D2P58180 307 aa15.04■□□□□ -0
SS18-211ENST00000578954 RPS15P62841 145 aaKnown RBP15.04■□□□□ -0
SS18-211ENST00000578954 SFT2D3Q587I9 215 aa15.04■□□□□ -0
SS18-211ENST00000578954 COX20Q5RI15 118 aa15.04■□□□□ -0
SS18-211ENST00000578954 DDX59Q5T1V6 619 aaKnown RBP eCLIP15.04■□□□□ -0
SS18-211ENST00000578954 MFSD12Q6NUT3 480 aa15.04■□□□□ -0
SS18-211ENST00000578954 CPEB2Q7Z5Q1 589 aaKnown RBP15.04■□□□□ -0
SS18-211ENST00000578954 ZNF615Q8N8J6 731 aa15.04■□□□□ -0
SS18-211ENST00000578954 MORN4Q8NDC4 146 aa15.04■□□□□ -0
SS18-211ENST00000578954 SIMC1Q8NDZ2 872 aa15.04■□□□□ -0
SS18-211ENST00000578954 NFAM1Q8NET5 270 aaPredicted RBP15.04■□□□□ -0
SS18-211ENST00000578954 OR10A6Q8NH74 314 aa15.04■□□□□ -0
SS18-211ENST00000578954 PNPT1Q8TCS8 783 aaKnown RBP15.04■□□□□ -0
SS18-211ENST00000578954 ZNF721Q8TF20 911 aa15.04■□□□□ -0
SS18-211ENST00000578954 CLPTM1LQ96KA5 538 aa15.04■□□□□ -0
SS18-211ENST00000578954 RAB3IPQ96QF0 476 aaPredicted RBP15.04■□□□□ -0
SS18-211ENST00000578954 ECSITQ9BQ95 431 aa15.04■□□□□ -0
SS18-211ENST00000578954 ANKRA2Q9H9E1 313 aa15.04■□□□□ -0
SS18-211ENST00000578954 SUCOQ9UBS9 1254 aaKnown RBP15.04■□□□□ -0
SS18-211ENST00000578954 SLC7A8Q9UHI5 535 aa15.04■□□□□ -0
SS18-211ENST00000578954 KLK13Q9UKR3 277 aa15.04■□□□□ -0
SS18-211ENST00000578954 ERVK-19Q9WJR5 959 aa15.04■□□□□ -0
SS18-211ENST00000578954 HS3ST3B1Q9Y662 390 aa15.04■□□□□ -0
SS18-211ENST00000578954 CLCA3PQ9Y6N3 262 aa15.04■□□□□ -0
SS18-211ENST00000578954 LOC101059948A0A1B0GTJ6 334 aa15.03■□□□□ -0
SS18-211ENST00000578954 SAGE2PA6NJ88 616 aa15.03■□□□□ -0
SS18-211ENST00000578954 HRKO00198 91 aa15.03■□□□□ -0
SS18-211ENST00000578954 PRAMEF2O60811 474 aa15.03■□□□□ -0
SS18-211ENST00000578954 PDE5AO76074 875 aa15.03■□□□□ -0
SS18-211ENST00000578954 TNNI3P19429 210 aa15.03■□□□□ -0
SS18-211ENST00000578954 ME2P23368 584 aa15.03■□□□□ -0
SS18-211ENST00000578954 HTR1EP28566 365 aa15.03■□□□□ -0
SS18-211ENST00000578954 DLSTP36957 453 aa15.03■□□□□ -0
SS18-211ENST00000578954 PRIM2P49643 509 aa15.03■□□□□ -0
SS18-211ENST00000578954 FOXC1Q12948 553 aa15.03■□□□□ -0
SS18-211ENST00000578954 BNIP2Q12982 314 aa15.03■□□□□ -0
SS18-211ENST00000578954 ZNF267Q14586 743 aaPredicted RBP15.03■□□□□ -0
SS18-211ENST00000578954 LASP1Q14847 261 aaKnown RBP15.03■□□□□ -0
SS18-211ENST00000578954 CDC73Q6P1J9 531 aa15.03■□□□□ -0
SS18-211ENST00000578954 PTRH1Q86Y79 214 aaKnown RBP15.03■□□□□ -0
SS18-211ENST00000578954 PTOV1Q86YD1 416 aa15.03■□□□□ -0
SS18-211ENST00000578954 HPS6Q86YV9 775 aa15.03■□□□□ -0
SS18-211ENST00000578954 LGI4Q8N135 537 aa15.03■□□□□ -0
SS18-211ENST00000578954 HORMAD2Q8N7B1 307 aa15.03■□□□□ -0
SS18-211ENST00000578954 OR52R1Q8NGF1 315 aa15.03■□□□□ -0
SS18-211ENST00000578954 SLC2A12Q8TD20 617 aa15.03■□□□□ -0
SS18-211ENST00000578954 SENP5Q96HI0 755 aaPredicted RBP15.03■□□□□ -0
SS18-211ENST00000578954 REXO5Q96IC2 774 aaKnown RBP15.03■□□□□ -0
SS18-211ENST00000578954 MAGED4Q96JG8 741 aa15.03■□□□□ -0
SS18-211ENST00000578954 ACTRT3Q9BYD9 372 aa15.03■□□□□ -0
SS18-211ENST00000578954 TMEM38AQ9H6F2 299 aa15.03■□□□□ -0
SS18-211ENST00000578954 THUMPD1Q9NXG2 353 aaKnown RBP15.03■□□□□ -0
SS18-211ENST00000578954 GIN1Q9NXP7 522 aa15.03■□□□□ -0
SS18-211ENST00000578954 GMPR2Q9P2T1 348 aaKnown RBP15.03■□□□□ -0
SS18-211ENST00000578954 PACSIN3Q9UKS6 424 aa15.03■□□□□ -0
SS18-211ENST00000578954 TRABD2BA6NFA1 517 aa15.02■□□□□ -0
SS18-211ENST00000578954 TTC36A6NLP5 189 aa15.02■□□□□ -0
SS18-211ENST00000578954 ANKRD65E5RJM6 399 aa15.02■□□□□ -0
SS18-211ENST00000578954 ETFAP13804 333 aa15.02■□□□□ -0
SS18-211ENST00000578954 MATN1P21941 496 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms