RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 PHF11Q9UIL8 331 aa9.54□□□□□ -0.88
SS18-207ENST00000577636 POMT2Q9UKY4 750 aa9.54□□□□□ -0.88
SS18-207ENST00000577636 B3GNT3Q9Y2A9 372 aa9.54□□□□□ -0.88
SS18-207ENST00000577636 A0A0A6YYD5 115 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 C1orf226A1L170 272 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 SLC9B1P1A6NJY1 282 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 TMEM150CB9EJG8 249 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 MASP2O00187 686 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 CXCR6O00574 342 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 B3GALT2O43825 422 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 EIF2S1P05198 315 aaKnown RBP9.53□□□□□ -0.88
SS18-207ENST00000577636 PRF1P14222 555 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 GGT1P19440 569 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 ATP6V1B2P21281 511 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 ATP5A1P25705 553 aaKnown RBP9.53□□□□□ -0.88
SS18-207ENST00000577636 BUD31P41223 144 aaPredicted RBP9.53□□□□□ -0.88
SS18-207ENST00000577636 CDKN2CP42773 168 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 PRIM2P49643 509 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 ANXA11P50995 505 aaKnown RBP9.53□□□□□ -0.88
SS18-207ENST00000577636 MANFP55145 182 aaKnown RBP9.53□□□□□ -0.88
SS18-207ENST00000577636 WNT3P56703 355 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 RAB8AP61006 207 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 BTN3A2P78410 334 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 SELPLGQ14242 412 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 FAM98BQ52LJ0 330 aaKnown RBP9.53□□□□□ -0.88
SS18-207ENST00000577636 NDUFAF5Q5TEU4 345 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 BHLHB9Q6PI77 547 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 UBE3DQ7Z6J8 389 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 RAB43Q86YS6 212 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 SAMD14Q8IZD0 417 aaPredicted RBP9.53□□□□□ -0.88
SS18-207ENST00000577636 CLECL1Q8IZS7 167 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 FAM47BQ8NA70 645 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 OR8K5Q8NH50 307 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 GOT1L1Q8NHS2 421 aaPredicted RBP9.53□□□□□ -0.88
SS18-207ENST00000577636 FLVCR1-AS1Q8TAF5 88 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 DNAJC9Q8WXX5 260 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 N4BP2L2Q92802 583 aaPredicted RBP9.53□□□□□ -0.88
SS18-207ENST00000577636 MIEF2Q96C03 454 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 AURKBQ96GD4 344 aaPredicted RBP9.53□□□□□ -0.88
SS18-207ENST00000577636 ZNF583Q96ND8 569 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 OR2A5Q96R48 311 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 BBS4Q96RK4 519 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 SERINC2Q96SA4 455 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 CD180Q99467 661 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 KLHL25Q9H0H3 589 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 GORASP2Q9H8Y8 452 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 TPT1P8Q9HAU6 139 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 ARMC1Q9NVT9 282 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 C5AR2Q9P296 337 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 ENTPD4Q9Y227 616 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 OSGIN2Q9Y236 505 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 ZNF780BQ9Y6R6 833 aa9.53□□□□□ -0.88
SS18-207ENST00000577636 A0A0G2JN53 185 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 TMEM247A6NEH6 219 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 C9J4A7 227 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 H3BNX3 289 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 PEX12O00623 359 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 LRRTM2O43300 516 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 PEX1O43933 1283 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 SCN2BO60939 215 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 C6orf47O95873 294 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 TBX6O95947 436 aaPredicted RBP9.52□□□□□ -0.89
SS18-207ENST00000577636 STATHP02808 62 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 ZNF888P0CJ79 500 aaPredicted RBP9.52□□□□□ -0.89
SS18-207ENST00000577636 NCK1P16333 377 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 AGXTP21549 392 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 UQCRC2P22695 453 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 FASP25445 335 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 GPC1P35052 558 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 SOX11P35716 441 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 CRATP43155 626 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 OR4D2P58180 307 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 CHRNB3Q05901 458 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 TAF11Q15544 211 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 FXNQ16595 210 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 NDUFA9Q16795 377 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 GRAMD1BQ3KR37 738 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 GTDC1Q4AE62 458 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 FCRL6Q6DN72 434 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 FBXO42Q6P3S6 717 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 ZNF517Q6ZMY9 492 aaPredicted RBP9.52□□□□□ -0.89
SS18-207ENST00000577636 RNF44Q7L0R7 432 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 SLC30A8Q8IWU4 369 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 MSRB3Q8IXL7 192 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 SLC34A3Q8N130 599 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 EID3Q8N140 333 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 ZADH2Q8N4Q0 377 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 CSNK1A1LQ8N752 337 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 C19orf47Q8N9M1 422 aaKnown RBP9.52□□□□□ -0.89
SS18-207ENST00000577636 CLEC1AQ8NC01 280 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 ICA1LQ8NDH6 482 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 OR1L3Q8NH93 324 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 EXOSC8Q96B26 276 aaKnown RBP9.52□□□□□ -0.89
SS18-207ENST00000577636 TM4SF19Q96DZ7 209 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 FER1L6-AS2Q96M78 137 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 LRFN5Q96NI6 719 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 MACROD1Q9BQ69 325 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 SLC35A5Q9BS91 424 aa9.52□□□□□ -0.89
SS18-207ENST00000577636 ZNF717Q9BY31 904 aaPredicted RBP9.52□□□□□ -0.89
SS18-207ENST00000577636 KLHL31Q9H511 634 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms