RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 C3orf38Q5JPI3 329 aa28.56■■■□□ 2.16
CTCF-203ENST00000566078 MLIPQ5VWP3 458 aa28.56■■■□□ 2.16
CTCF-203ENST00000566078 FBXO30Q8TB52 745 aa28.56■■■□□ 2.16
CTCF-203ENST00000566078 RAB8BQ92930 207 aa28.56■■■□□ 2.16
CTCF-203ENST00000566078 OTUB1Q96FW1 271 aaPredicted RBP28.56■■■□□ 2.16
CTCF-203ENST00000566078 ASPSCR1Q9BZE9 553 aa28.56■■■□□ 2.16
CTCF-203ENST00000566078 TMEM38AQ9H6F2 299 aa28.56■■■□□ 2.16
CTCF-203ENST00000566078 SOX17Q9H6I2 414 aaPredicted RBP28.56■■■□□ 2.16
CTCF-203ENST00000566078 AKIRIN1Q9H9L7 192 aaPredicted RBP28.56■■■□□ 2.16
CTCF-203ENST00000566078 ADAP2Q9NPF8 381 aa28.56■■■□□ 2.16
CTCF-203ENST00000566078 SDK2Q58EX2 2172 aa28.56■■■□□ 2.16
CTCF-203ENST00000566078 AQP12BA6NM10 295 aa28.55■■■□□ 2.16
CTCF-203ENST00000566078 HMGN4O00479 90 aa28.55■■■□□ 2.16
CTCF-203ENST00000566078 ANXA11P50995 505 aaKnown RBP28.55■■■□□ 2.16
CTCF-203ENST00000566078 RBBP4Q09028 425 aa28.55■■■□□ 2.16
CTCF-203ENST00000566078 MAP7Q14244 749 aa28.55■■■□□ 2.16
CTCF-203ENST00000566078 NKG7Q16617 165 aa28.55■■■□□ 2.16
CTCF-203ENST00000566078 AQP12AQ8IXF9 295 aa28.55■■■□□ 2.16
CTCF-203ENST00000566078 C10orf67Q8IYJ2 551 aa28.55■■■□□ 2.16
CTCF-203ENST00000566078 GALNT6Q8NCL4 622 aa28.55■■■□□ 2.16
CTCF-203ENST00000566078 WDR36Q8NI36 951 aaKnown RBP28.55■■■□□ 2.16
CTCF-203ENST00000566078 PYDC1Q8WXC3 89 aa28.55■■■□□ 2.16
CTCF-203ENST00000566078 MR1Q95460 341 aa28.55■■■□□ 2.16
CTCF-203ENST00000566078 GORASP2Q9H8Y8 452 aa28.55■■■□□ 2.16
CTCF-203ENST00000566078 PNO1Q9NRX1 252 aaKnown RBP28.55■■■□□ 2.16
CTCF-203ENST00000566078 TEX51A0A1B0GUA7 166 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 TCRBV16S1A1N1A0A5B0 115 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 TCRBV3S1A0A5B6 114 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 H0Y3Z8 333 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 NME6O75414 186 aaPredicted RBP28.54■■■□□ 2.16
CTCF-203ENST00000566078 CREG1O75629 220 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 C8BP07358 591 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 OR12D1P0DN82 309 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 ARAFP10398 606 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 TNNI3P19429 210 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 GALNSP34059 522 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 MAGEA8P43361 318 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 SCARB2Q14108 478 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 VEZF1Q14119 521 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 NSDHLQ15738 373 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 MFSD12Q6NUT3 480 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 C7orf57Q8NEG2 295 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 NFKBIDQ8NI38 313 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 MIPOL1Q8TD10 442 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 ACTRT3Q9BYD9 372 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 SLC26A1Q9H2B4 701 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 GPN3Q9UHW5 284 aaPredicted RBP28.54■■■□□ 2.16
CTCF-203ENST00000566078 SATB2Q9UPW6 733 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 TM4SF5O14894 197 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 FKBP6O75344 327 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 STK17BO94768 372 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 ALBP02768 609 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 PGDP52209 483 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 ZNF630Q2M218 657 aaPredicted RBP28.54■■■□□ 2.16
CTCF-203ENST00000566078 PLPP5Q8NEB5 264 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 A4GALTQ9NPC4 353 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 ZNF639Q9UID6 485 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 WDFY3Q8IZQ1 3526 aa28.54■■■□□ 2.16
CTCF-203ENST00000566078 VSTM2BA6NLU5 285 aa28.53■■■□□ 2.16
CTCF-203ENST00000566078 C17orf105B2RV13 164 aa28.53■■■□□ 2.16
CTCF-203ENST00000566078 CNOT3O75175 753 aaKnown RBP28.53■■■□□ 2.16
CTCF-203ENST00000566078 CBX7O95931 251 aa28.53■■■□□ 2.16
CTCF-203ENST00000566078 HEXBP07686 556 aa28.53■■■□□ 2.16
CTCF-203ENST00000566078 NOVA1P51513 510 aaKnown RBP28.53■■■□□ 2.16
CTCF-203ENST00000566078 RHDQ02161 417 aa28.53■■■□□ 2.16
CTCF-203ENST00000566078 ZNF267Q14586 743 aaPredicted RBP28.53■■■□□ 2.16
CTCF-203ENST00000566078 MRPL14Q6P1L8 145 aaKnown RBP28.53■■■□□ 2.16
CTCF-203ENST00000566078 FAM199XQ6PEV8 388 aaPredicted RBP28.53■■■□□ 2.16
CTCF-203ENST00000566078 LGI4Q8N135 537 aa28.53■■■□□ 2.16
CTCF-203ENST00000566078 OR52R1Q8NGF1 315 aa28.53■■■□□ 2.16
CTCF-203ENST00000566078 OR7D2Q96RA2 312 aa28.53■■■□□ 2.16
CTCF-203ENST00000566078 CNPPD1Q9BV87 410 aa28.53■■■□□ 2.16
CTCF-203ENST00000566078 S100A14Q9HCY8 104 aa28.53■■■□□ 2.16
CTCF-203ENST00000566078 THUMPD1Q9NXG2 353 aaKnown RBP28.53■■■□□ 2.16
CTCF-203ENST00000566078 TCRBV5S2A0A599 114 aa28.52■■■□□ 2.16
CTCF-203ENST00000566078 A8MUA0 341 aa28.52■■■□□ 2.16
CTCF-203ENST00000566078 HRKO00198 91 aa28.52■■■□□ 2.16
CTCF-203ENST00000566078 CEACAM1P13688 526 aa28.52■■■□□ 2.16
CTCF-203ENST00000566078 CDK6Q00534 326 aa28.52■■■□□ 2.16
CTCF-203ENST00000566078 EEF1A2Q05639 463 aaKnown RBP28.52■■■□□ 2.16
CTCF-203ENST00000566078 RCN1Q15293 331 aa28.52■■■□□ 2.16
CTCF-203ENST00000566078 MTX3Q5HYI7 312 aa28.52■■■□□ 2.16
CTCF-203ENST00000566078 FAM198BQ6UWH4 519 aa28.52■■■□□ 2.16
CTCF-203ENST00000566078 WDR53Q7Z5U6 358 aaPredicted RBP28.52■■■□□ 2.16
CTCF-203ENST00000566078 TMEM151BQ8IW70 566 aa28.52■■■□□ 2.16
CTCF-203ENST00000566078 ERVK-19Q9WJR5 959 aa28.52■■■□□ 2.16
CTCF-203ENST00000566078 KNTC1P50748 2209 aa28.51■■■□□ 2.16
CTCF-203ENST00000566078 IDSB3KWA1 339 aa28.51■■■□□ 2.15
CTCF-203ENST00000566078 C9orf172C9J069 976 aa28.51■■■□□ 2.15
CTCF-203ENST00000566078 COQ9O75208 318 aa28.51■■■□□ 2.15
CTCF-203ENST00000566078 BCHEP06276 602 aa28.51■■■□□ 2.15
CTCF-203ENST00000566078 S1PR1P21453 382 aa28.51■■■□□ 2.15
CTCF-203ENST00000566078 TXNL4AP83876 142 aaKnown RBP28.51■■■□□ 2.15
CTCF-203ENST00000566078 TARDBPQ13148 414 aaKnown RBP eCLIP28.51■■■□□ 2.15
CTCF-203ENST00000566078 DUSP8Q13202 625 aa28.51■■■□□ 2.15
CTCF-203ENST00000566078 LRRC23Q53EV4 343 aaPredicted RBP28.51■■■□□ 2.15
CTCF-203ENST00000566078 FAAH2Q6GMR7 532 aa28.51■■■□□ 2.15
CTCF-203ENST00000566078 CDC73Q6P1J9 531 aa28.51■■■□□ 2.15
CTCF-203ENST00000566078 AAGABQ6PD74 315 aa28.51■■■□□ 2.15
CTCF-203ENST00000566078 XAGE5Q8WWM1 108 aa28.51■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms