RNA–Protein interactions for RNA: ENST00000564641.1

CHD9-212, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 4

Gene CHD9, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-212ENST00000564641 RPL35AP18077 110 aaKnown RBP3.38□□□□□ -1.87
CHD9-212ENST00000564641 CMA1P23946 247 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 IL4RP24394 825 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 TIA1P31483 386 aaKnown RBP eCLIP3.38□□□□□ -1.87
CHD9-212ENST00000564641 HPDP32754 393 aaPredicted RBP3.38□□□□□ -1.87
CHD9-212ENST00000564641 SYKP43405 635 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 MAT1AQ00266 395 aaKnown RBP3.38□□□□□ -1.87
CHD9-212ENST00000564641 MYL7Q01449 175 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 GCNT1Q02742 428 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 C2orf54Q08AI8 447 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 ZNF415Q09FC8 603 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 UGCGQ16739 394 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 CA9Q16790 459 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 FAM174BQ3ZCQ3 159 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 FUT11Q495W5 492 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 C6orf163Q5TEZ5 329 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 AGBL2Q5U5Z8 902 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 SHEQ5VZ18 495 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 GALNT17Q6IS24 598 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 GDPGP1Q6ZNW5 385 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 CDHR3Q6ZTQ4 885 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 NCCRP1Q6ZVX7 275 aaPredicted RBP3.38□□□□□ -1.87
CHD9-212ENST00000564641 GET4Q7L5D6 327 aaPredicted RBP3.38□□□□□ -1.87
CHD9-212ENST00000564641 NANOGNBQ7Z5D8 188 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 ZER1Q7Z7L7 766 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 IQCKQ8N0W5 287 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 NAT8LQ8N9F0 302 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 OR8H1Q8NGG4 311 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 OCC1Q8TAD7 63 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 RSPH1Q8WYR4 309 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 SLC35B4Q969S0 331 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 NXNL1Q96CM4 212 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 PDLIM5Q96HC4 596 aaKnown RBP3.38□□□□□ -1.87
CHD9-212ENST00000564641 SFXN2Q96NB2 322 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 NAP1L3Q99457 506 aaPredicted RBP3.38□□□□□ -1.87
CHD9-212ENST00000564641 OVOL2Q9BRP0 275 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 TEX13BQ9BXU2 312 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 NSRP1Q9H0G5 558 aaKnown RBP3.38□□□□□ -1.87
CHD9-212ENST00000564641 RAB17Q9H0T7 212 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 CARD9Q9H257 536 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 FZD8Q9H461 694 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 HAUS4Q9H6D7 363 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 ECT2Q9H8V3 914 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 TBC1D17Q9HA65 648 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 ABCB8Q9NUT2 735 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 RMND1Q9NWS8 449 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 RHBDL2Q9NX52 303 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 TBC1D7Q9P0N9 293 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 GUCA1BQ9UMX6 200 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 CHMP2BQ9UQN3 213 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 STK38LQ9Y2H1 464 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 SH3GLB1Q9Y371 365 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 CDK5RAP2Q96SN8 1893 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 TTC28Q96AY4 2481 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 PFASO15067 1338 aa3.38□□□□□ -1.87
CHD9-212ENST00000564641 ZSWIM8A7E2V4 1837 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 LAMA2P24043 3122 aaKnown RBP3.37□□□□□ -1.87
CHD9-212ENST00000564641 C5orf52A6NGY3 159 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 TMEM110-MUSTN1A8MSY1 372 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 DDX39AO00148 427 aaKnown RBP3.37□□□□□ -1.87
CHD9-212ENST00000564641 LSM1O15116 133 aaKnown RBP3.37□□□□□ -1.87
CHD9-212ENST00000564641 ARPC2O15144 300 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 HOXD4P09016 255 aaPredicted RBP3.37□□□□□ -1.87
CHD9-212ENST00000564641 OR52Z1P0C646 297 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 FAM58BPP0C7Q3 252 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 DUX4L4P0CJ87 422 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 CYBAP13498 195 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 FOLR2P14207 255 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 PDGFRAP16234 1089 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 DNASE1P24855 282 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 CASP14P31944 242 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 CYLC1P35663 651 aaPredicted RBP3.37□□□□□ -1.87
CHD9-212ENST00000564641 CASP3P42574 277 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 ZNF131P52739 623 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 ADARP55265 1226 aaKnown RBP3.37□□□□□ -1.87
CHD9-212ENST00000564641 HNRNPKP61978 463 aaKnown RBP eCLIP3.37□□□□□ -1.87
CHD9-212ENST00000564641 ASIC1P78348 528 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 IRX4P78413 519 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 MRPS25P82663 173 aaKnown RBP3.37□□□□□ -1.87
CHD9-212ENST00000564641 ZFP36L1Q07352 338 aaKnown RBP3.37□□□□□ -1.87
CHD9-212ENST00000564641 SGCGQ13326 291 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 ITGB3BPQ13352 177 aaPredicted RBP3.37□□□□□ -1.87
CHD9-212ENST00000564641 PPP2R5CQ13362 524 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 ITGA7Q13683 1181 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 NFE2L1Q14494 772 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 INAQ16352 499 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 CLPPQ16740 277 aaPredicted RBP3.37□□□□□ -1.87
CHD9-212ENST00000564641 PHKG1Q16816 387 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 IMMTQ16891 758 aaKnown RBP3.37□□□□□ -1.87
CHD9-212ENST00000564641 UGT3A2Q3SY77 523 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 ZNF789Q5FWF6 425 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 CFAP157Q5JU67 520 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 CCDC122Q5T0U0 273 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 SPOUT1Q5T280 376 aaKnown RBP3.37□□□□□ -1.87
CHD9-212ENST00000564641 RNASEH2BQ5TBB1 312 aaKnown RBP3.37□□□□□ -1.87
CHD9-212ENST00000564641 THOC7Q6I9Y2 204 aaKnown RBP3.37□□□□□ -1.87
CHD9-212ENST00000564641 LCLAT1Q6UWP7 414 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 CHMP1BQ7LBR1 199 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 TRPM8Q7Z2W7 1104 aa3.37□□□□□ -1.87
CHD9-212ENST00000564641 SIAH3Q8IW03 269 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms