RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 TAGAPQ8N103 731 aa17.4■□□□□ 0.38
VPS35-202ENST00000561713 METTL4Q8N3J2 472 aa17.4■□□□□ 0.38
VPS35-202ENST00000561713 ZNF615Q8N8J6 731 aa17.4■□□□□ 0.38
VPS35-202ENST00000561713 OR4K14Q8NGD5 310 aa17.4■□□□□ 0.38
VPS35-202ENST00000561713 RILPQ96NA2 401 aa17.4■□□□□ 0.38
VPS35-202ENST00000561713 BRINP2Q9C0B6 783 aa17.4■□□□□ 0.38
VPS35-202ENST00000561713 OR10A5Q9H207 317 aa17.4■□□□□ 0.38
VPS35-202ENST00000561713 MRPL46Q9H2W6 279 aaKnown RBP17.4■□□□□ 0.38
VPS35-202ENST00000561713 CNIH4Q9P003 139 aa17.4■□□□□ 0.38
VPS35-202ENST00000561713 ZNF225Q9UK10 706 aa17.4■□□□□ 0.38
VPS35-202ENST00000561713 C15orf38-AP3S2A0A0A6YYH1 394 aa17.39■□□□□ 0.37
VPS35-202ENST00000561713 EXOC1LA0A1B0GW35 172 aa17.39■□□□□ 0.37
VPS35-202ENST00000561713 HCN1O60741 890 aa17.39■□□□□ 0.37
VPS35-202ENST00000561713 OR4F21O95013 312 aa17.39■□□□□ 0.37
VPS35-202ENST00000561713 DRD2P14416 443 aa17.39■□□□□ 0.37
VPS35-202ENST00000561713 GPX3P22352 226 aa17.39■□□□□ 0.37
VPS35-202ENST00000561713 UQCRC1P31930 480 aa17.39■□□□□ 0.37
VPS35-202ENST00000561713 FEN1P39748 380 aaKnown RBP17.39■□□□□ 0.37
VPS35-202ENST00000561713 ADAM8P78325 824 aa17.39■□□□□ 0.37
VPS35-202ENST00000561713 FUT7Q11130 342 aa17.39■□□□□ 0.37
VPS35-202ENST00000561713 C6orf163Q5TEZ5 329 aa17.39■□□□□ 0.37
VPS35-202ENST00000561713 CDC20BQ86Y33 519 aa17.39■□□□□ 0.37
VPS35-202ENST00000561713 LIX1Q8N485 282 aa17.39■□□□□ 0.37
VPS35-202ENST00000561713 C7orf57Q8NEG2 295 aa17.39■□□□□ 0.37
VPS35-202ENST00000561713 ADCY4Q8NFM4 1077 aa17.39■□□□□ 0.37
VPS35-202ENST00000561713 TRPC4APQ8TEL6 797 aa17.39■□□□□ 0.37
VPS35-202ENST00000561713 SELENOMQ8WWX9 145 aa17.39■□□□□ 0.37
VPS35-202ENST00000561713 MRPL57Q9BQC6 102 aaKnown RBP17.39■□□□□ 0.37
VPS35-202ENST00000561713 ITPAQ9BY32 194 aa17.39■□□□□ 0.37
VPS35-202ENST00000561713 NXF5Q9H1B4 397 aaKnown RBP17.39■□□□□ 0.37
VPS35-202ENST00000561713 PSD3Q9NYI0 1048 aa17.39■□□□□ 0.37
VPS35-202ENST00000561713 EHD3Q9NZN3 535 aa17.39■□□□□ 0.37
VPS35-202ENST00000561713 B4GALT7Q9UBV7 327 aa17.39■□□□□ 0.37
VPS35-202ENST00000561713 TMCO1Q9UM00 188 aa17.39■□□□□ 0.37
VPS35-202ENST00000561713 SYT5O00445 386 aa17.38■□□□□ 0.37
VPS35-202ENST00000561713 TRIM3O75382 744 aaPredicted RBP17.38■□□□□ 0.37
VPS35-202ENST00000561713 ERAL1O75616 437 aaKnown RBP17.38■□□□□ 0.37
VPS35-202ENST00000561713 GALNSP34059 522 aa17.38■□□□□ 0.37
VPS35-202ENST00000561713 MASP1P48740 699 aa17.38■□□□□ 0.37
VPS35-202ENST00000561713 ALDH9A1P49189 494 aa17.38■□□□□ 0.37
VPS35-202ENST00000561713 DGKQP52824 942 aa17.38■□□□□ 0.37
VPS35-202ENST00000561713 RIPPLY2Q5TAB7 128 aa17.38■□□□□ 0.37
VPS35-202ENST00000561713 SEM1Q6ZVN7 128 aa17.38■□□□□ 0.37
VPS35-202ENST00000561713 PAGE2Q7Z2X7 111 aa17.38■□□□□ 0.37
VPS35-202ENST00000561713 ULK2Q8IYT8 1036 aa17.38■□□□□ 0.37
VPS35-202ENST00000561713 DND1Q8IYX4 353 aaKnown RBP17.38■□□□□ 0.37
VPS35-202ENST00000561713 VWA5B2Q8N398 1253 aa17.38■□□□□ 0.37
VPS35-202ENST00000561713 TMEM151AQ8N4L1 468 aa17.38■□□□□ 0.37
VPS35-202ENST00000561713 C1orf52Q8N6N3 182 aaKnown RBP17.38■□□□□ 0.37
VPS35-202ENST00000561713 NEIL3Q8TAT5 605 aa17.38■□□□□ 0.37
VPS35-202ENST00000561713 SPPL2AQ8TCT8 520 aa17.38■□□□□ 0.37
VPS35-202ENST00000561713 ADIPOR1Q96A54 375 aa17.38■□□□□ 0.37
VPS35-202ENST00000561713 KLHL29Q96CT2 875 aa17.38■□□□□ 0.37
VPS35-202ENST00000561713 TMEM237Q96Q45 408 aa17.38■□□□□ 0.37
VPS35-202ENST00000561713 ALPK1Q96QP1 1244 aa17.38■□□□□ 0.37
VPS35-202ENST00000561713 MAT2BQ9NZL9 334 aa17.38■□□□□ 0.37
VPS35-202ENST00000561713 ADAM29Q9UKF5 820 aa17.38■□□□□ 0.37
VPS35-202ENST00000561713 PCDHA9Q9Y5H5 950 aa17.38■□□□□ 0.37
VPS35-202ENST00000561713 NPFFR2Q9Y5X5 522 aa17.38■□□□□ 0.37
VPS35-202ENST00000561713 MPDZO75970 2070 aa17.37■□□□□ 0.37
VPS35-202ENST00000561713 A0A087WUV0 522 aaPredicted RBP17.37■□□□□ 0.37
VPS35-202ENST00000561713 A6NNC1 897 aa17.37■□□□□ 0.37
VPS35-202ENST00000561713 NME6O75414 186 aaPredicted RBP17.37■□□□□ 0.37
VPS35-202ENST00000561713 TRAPPC6AO75865 159 aa17.37■□□□□ 0.37
VPS35-202ENST00000561713 OTCP00480 354 aa17.37■□□□□ 0.37
VPS35-202ENST00000561713 CTAGE8P0CG41 777 aa17.37■□□□□ 0.37
VPS35-202ENST00000561713 FOSL1P15407 271 aa17.37■□□□□ 0.37
VPS35-202ENST00000561713 CHN1P15882 459 aa17.37■□□□□ 0.37
VPS35-202ENST00000561713 ABCD3P28288 659 aa17.37■□□□□ 0.37
VPS35-202ENST00000561713 GCAP28676 217 aa17.37■□□□□ 0.37
VPS35-202ENST00000561713 HTR6P50406 440 aa17.37■□□□□ 0.37
VPS35-202ENST00000561713 TBL3Q12788 808 aaKnown RBP17.37■□□□□ 0.37
VPS35-202ENST00000561713 DCST1Q5T197 706 aa17.37■□□□□ 0.37
VPS35-202ENST00000561713 FNDC7Q5VTL7 733 aa17.37■□□□□ 0.37
VPS35-202ENST00000561713 SLC48A1Q6P1K1 146 aa17.37■□□□□ 0.37
VPS35-202ENST00000561713 CTAGE4Q8IX94 777 aa17.37■□□□□ 0.37
VPS35-202ENST00000561713 CDYL2Q8N8U2 506 aa17.37■□□□□ 0.37
VPS35-202ENST00000561713 NAXEQ8NCW5 288 aa17.37■□□□□ 0.37
VPS35-202ENST00000561713 GOT1L1Q8NHS2 421 aaPredicted RBP17.37■□□□□ 0.37
VPS35-202ENST00000561713 BCAP29Q9UHQ4 241 aa17.37■□□□□ 0.37
VPS35-202ENST00000561713 ZNF180Q9UJW8 692 aa17.37■□□□□ 0.37
VPS35-202ENST00000561713 CES1P1Q9UKY3 287 aa17.37■□□□□ 0.37
VPS35-202ENST00000561713 NFU1Q9UMS0 254 aa17.37■□□□□ 0.37
VPS35-202ENST00000561713 SLC6A5Q9Y345 797 aa17.37■□□□□ 0.37
VPS35-202ENST00000561713 FAM47E-STBD1D6RA91 191 aa17.36■□□□□ 0.37
VPS35-202ENST00000561713 TP53I11O14683 189 aa17.36■□□□□ 0.37
VPS35-202ENST00000561713 GNB5O14775 395 aa17.36■□□□□ 0.37
VPS35-202ENST00000561713 COL6A2P12110 1019 aa17.36■□□□□ 0.37
VPS35-202ENST00000561713 GABRA1P14867 456 aa17.36■□□□□ 0.37
VPS35-202ENST00000561713 PORP16435 677 aaPredicted RBP17.36■□□□□ 0.37
VPS35-202ENST00000561713 S1PR1P21453 382 aa17.36■□□□□ 0.37
VPS35-202ENST00000561713 CNTFP26441 200 aa17.36■□□□□ 0.37
VPS35-202ENST00000561713 SOX18P35713 384 aa17.36■□□□□ 0.37
VPS35-202ENST00000561713 MRPS35P82673 323 aaKnown RBP17.36■□□□□ 0.37
VPS35-202ENST00000561713 CRYZQ08257 329 aaKnown RBP17.36■□□□□ 0.37
VPS35-202ENST00000561713 MGAT2Q10469 447 aa17.36■□□□□ 0.37
VPS35-202ENST00000561713 TOMM20Q15388 145 aa17.36■□□□□ 0.37
VPS35-202ENST00000561713 PRICKLE4Q2TBC4 344 aa17.36■□□□□ 0.37
VPS35-202ENST00000561713 ACSF3Q4G176 576 aaPredicted RBP17.36■□□□□ 0.37
VPS35-202ENST00000561713 TMEM198Q66K66 360 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms