RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 TTC19Q6DKK2 380 aaPredicted RBP10.64□□□□□ -0.71
USP3-220ENST00000561381 FAM180BQ6P0A1 224 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 METTL2BQ6P1Q9 378 aaKnown RBP10.64□□□□□ -0.71
USP3-220ENST00000561381 POMZP3Q6PJE2 187 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 OR4F6Q8NGB9 312 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 SLC44A1Q8WWI5 657 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 ANP32BQ92688 251 aaKnown RBP10.64□□□□□ -0.71
USP3-220ENST00000561381 SH3GL2Q99962 352 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 NTMT1Q9BV86 223 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 ANGPTL4Q9BY76 406 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 POLDIP3Q9BY77 421 aaKnown RBP10.64□□□□□ -0.71
USP3-220ENST00000561381 NXF5Q9H1B4 397 aaKnown RBP10.64□□□□□ -0.71
USP3-220ENST00000561381 SLC24A3Q9HC58 644 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 CCM2LQ9NUG4 571 aaPredicted RBP10.64□□□□□ -0.71
USP3-220ENST00000561381 XPR1Q9UBH6 696 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 C15orf41Q9Y2V0 281 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 PCDHGB3Q9Y5G1 929 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.64□□□□□ -0.71
USP3-220ENST00000561381 CAPN14A8MX76 684 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 FAM47E-STBD1D6RA91 191 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 STX16-NPEPL1H3BU86 382 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 STX16O14662 325 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 GNB5O14775 395 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 ST8SIA5O15466 376 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 SNX4O95219 450 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 HPNP05981 417 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 ABCB1P08183 1280 aaPredicted RBP10.63□□□□□ -0.71
USP3-220ENST00000561381 RBP1P09455 135 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 PORP16435 677 aaPredicted RBP10.63□□□□□ -0.71
USP3-220ENST00000561381 BMP7P18075 431 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 TSPAN8P19075 237 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 ABCD3P28288 659 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 FEN1P39748 380 aaKnown RBP10.63□□□□□ -0.71
USP3-220ENST00000561381 MASP1P48740 699 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 AGFG1P52594 562 aaKnown RBP10.63□□□□□ -0.71
USP3-220ENST00000561381 ZNF136P52737 540 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 MAPK12P53778 367 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 CDH13P55290 713 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 MGAT2Q10469 447 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 GALNT1Q10472 559 aaPredicted RBP10.63□□□□□ -0.71
USP3-220ENST00000561381 IFT88Q13099 833 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 EXOSC7Q15024 291 aaKnown RBP10.63□□□□□ -0.71
USP3-220ENST00000561381 TOMM20Q15388 145 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 PRICKLE4Q2TBC4 344 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 WIPI1Q5MNZ9 446 aaPredicted RBP10.63□□□□□ -0.71
USP3-220ENST00000561381 VASNQ6EMK4 673 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 C8orf74Q6P047 294 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 LETMD1Q6P1Q0 360 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 COMMD6Q7Z4G1 85 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 MILR1Q7Z6M3 343 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 VWA5B2Q8N398 1253 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 METTL4Q8N3J2 472 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 ADCY4Q8NFM4 1077 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 OR7G1Q8NGA0 311 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 ISL2Q96A47 359 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 NTNG2Q96CW9 530 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 HBEGFQ99075 208 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 ITPAQ9BY32 194 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 UGT2B28Q9BY64 529 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 BRINP2Q9C0B6 783 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 PRDM14Q9GZV8 571 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 EPB41L4BQ9H329 900 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 CDC42EP4Q9H3Q1 356 aaKnown RBP10.63□□□□□ -0.71
USP3-220ENST00000561381 RASSF1Q9NS23 344 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 ADAM29Q9UKF5 820 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 CES1P1Q9UKY3 287 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 SLC12A4Q9UP95 1085 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 CAMK2AQ9UQM7 478 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 PCDHA9Q9Y5H5 950 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 ABCA4P78363 2273 aa10.63□□□□□ -0.71
USP3-220ENST00000561381 ZFHX3Q15911 3703 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 SETD2Q9BYW2 2564 aaPredicted RBP10.62□□□□□ -0.71
USP3-220ENST00000561381 FAM221AA4D161 298 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 DVL2O14641 736 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 NME6O75414 186 aaPredicted RBP10.62□□□□□ -0.71
USP3-220ENST00000561381 ERAL1O75616 437 aaKnown RBP10.62□□□□□ -0.71
USP3-220ENST00000561381 PDYNP01213 254 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 RPS17P08708 135 aaKnown RBP10.62□□□□□ -0.71
USP3-220ENST00000561381 SBK3P0C264 359 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 PTPN6P29350 595 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 PHBP35232 272 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 TIMP3P35625 211 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 PTGDSP41222 190 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 TMED10P49755 219 aaKnown RBP10.62□□□□□ -0.71
USP3-220ENST00000561381 ASCL1P50553 236 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 NAGLUP54802 743 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 NRG3P56975 720 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 LTB4RQ15722 352 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 GGTA1PQ4G0N0 100 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 NSUN5P2Q63ZY6 315 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 TIGD3Q6B0B8 471 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 SLC48A1Q6P1K1 146 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 PAGE2Q7Z2X7 111 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 YRDCQ86U90 279 aaKnown RBP10.62□□□□□ -0.71
USP3-220ENST00000561381 LACC1Q8IV20 430 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 C17orf47Q8NEP4 570 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 UHMK1Q8TAS1 419 aaKnown RBP10.62□□□□□ -0.71
USP3-220ENST00000561381 RNASE6Q93091 150 aaKnown RBP10.62□□□□□ -0.71
USP3-220ENST00000561381 HGDQ93099 445 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 TM4SF18Q96CE8 201 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms