RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 SNX3O60493 162 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 TBX19O60806 448 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 PEX11AO75192 247 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 OR6B1O95007 311 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 TGDSO95455 350 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 CBX7O95931 251 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 SP1P08047 785 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 CD46P15529 392 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 PCSK2P16519 638 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 NME2P22392 152 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 MAPK1P28482 360 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 SOX3P41225 446 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 ASMTP46597 345 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 RPL14P50914 215 aaKnown RBP8.66□□□□□ -1.02
LDLR-211ENST00000560173 MRPS35P82673 323 aaKnown RBP8.66□□□□□ -1.02
LDLR-211ENST00000560173 OCRLQ01968 901 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 PDE7AQ13946 482 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 PIGGQ5H8A4 983 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 SLC25A25Q6KCM7 469 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 CCDC121Q6ZUS5 278 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 SLC29A4Q7RTT9 530 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 SPATA21Q7Z572 469 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 CCDC116Q8IYX3 515 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 FAM9CQ8IZT9 166 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 TMEM156Q8N614 296 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 BCORP1Q8N888 145 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 GALNT11Q8NCW6 608 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 SIMC1Q8NDZ2 872 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 ADCY4Q8NFM4 1077 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 OR9A2Q8NGT5 310 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 CLHC1Q8NHS4 586 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 ASB15Q8WXK1 588 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 ZNF75CPQ92670 426 aaPredicted RBP8.66□□□□□ -1.02
LDLR-211ENST00000560173 TUBGCP3Q96CW5 907 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 ERP27Q96DN0 273 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 BBS4Q96RK4 519 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 GAL3ST4Q96RP7 486 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 SIKE1Q9BRV8 207 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 C1orf50Q9BV19 199 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 BRINP2Q9C0B6 783 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 OR10A5Q9H207 317 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 KLHL1Q9NR64 748 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 PNPOQ9NVS9 261 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 THAP1Q9NVV9 213 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 MAP10Q9P2G4 905 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 BAIAP2L1Q9UHR4 511 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 ARL2BPQ9Y2Y0 163 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 CROCCQ5TZA2 2017 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 ASPDHA6ND91 283 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 A8MVJ9 347 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 AKAP10O43572 662 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 EDF1O60869 148 aaKnown RBP8.65□□□□□ -1.02
LDLR-211ENST00000560173 LRATO95237 230 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 RASAL1O95294 804 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 GPX3P22352 226 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 NTSP30990 170 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 NCBP2P52298 156 aaKnown RBP eCLIP8.65□□□□□ -1.02
LDLR-211ENST00000560173 PMP22Q01453 160 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 UBAP2LQ14157 1087 aaKnown RBP8.65□□□□□ -1.02
LDLR-211ENST00000560173 EXOSC7Q15024 291 aaKnown RBP8.65□□□□□ -1.02
LDLR-211ENST00000560173 TRMT12Q53H54 448 aaKnown RBP8.65□□□□□ -1.02
LDLR-211ENST00000560173 IL23RQ5VWK5 629 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 ZNF324BQ6AW86 544 aaPredicted RBP8.65□□□□□ -1.02
LDLR-211ENST00000560173 ANKRD26P1Q6NSI1 321 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 OPN5Q6U736 354 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 FAM180AQ6UWF9 173 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 LYPD8Q6UX82 237 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 GALNTL5Q7Z4T8 443 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 MDGA2Q7Z553 956 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 ATCAYQ86WG3 371 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 LIX1Q8N485 282 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 SLC15A4Q8N697 577 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 FNDC5Q8NAU1 212 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 TMEM178AQ8NBL3 297 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 OR52R1Q8NGF1 315 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 C16orf52Q8NHV5 167 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 SLC22A8Q8TCC7 542 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 FAR1Q8WVX9 515 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 KAT2AQ92830 837 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 GFM2Q969S9 779 aaKnown RBP8.65□□□□□ -1.02
LDLR-211ENST00000560173 ADIPOR1Q96A54 375 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 TMEM125Q96AQ2 219 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 PPP1R36Q96LQ0 422 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 AMDHD1Q96NU7 426 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 ELAC2Q9BQ52 826 aaKnown RBP8.65□□□□□ -1.02
LDLR-211ENST00000560173 SLX1AQ9BQ83 275 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 REEP4Q9H6H4 257 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 AKTIPQ9H8T0 292 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 AGPAT4Q9NRZ5 378 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 RYDENQ9NUL5 291 aaKnown RBP8.65□□□□□ -1.02
LDLR-211ENST00000560173 FGFR1OP2Q9NVK5 253 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 HPF1Q9NWY4 346 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 ASIC5Q9NY37 505 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 ERVK-11Q9UQG0 969 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 DTX4Q9Y2E6 619 aa8.65□□□□□ -1.02
LDLR-211ENST00000560173 ESPL1Q14674 2120 aa8.65□□□□□ -1.03
LDLR-211ENST00000560173 USP9YO00507 2555 aaPredicted RBP8.65□□□□□ -1.03
LDLR-211ENST00000560173 DOPEY1Q5JWR5 2465 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 C2orf92A0A1B0GVN3 265 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 SCAMP2O15127 329 aaKnown RBP8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 99.2 ms