RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 FNDC11Q9BVV2 318 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 NEUROD4Q9HD90 331 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 TOR4AQ9NXH8 423 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 MKLN1Q9UL63 735 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 ATG4BQ9Y4P1 393 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 TBC1D3BA6NDS4 549 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 HMGN2P05204 90 aaKnown RBP12.15□□□□□ -0.46
LDLR-207ENST00000558013 RNF144AP50876 292 aaPredicted RBP12.15□□□□□ -0.46
LDLR-207ENST00000558013 RHAGQ02094 409 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 OR4C11Q6IEV9 310 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 ABI3BPQ7Z7G0 1075 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 SIMC1Q8NDZ2 872 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 SLC9A6Q92581 669 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 ARSGQ96EG1 525 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 COX14Q96I36 57 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 DCLRE1CQ96SD1 692 aaKnown RBP12.15□□□□□ -0.46
LDLR-207ENST00000558013 ZNF607Q96SK3 696 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 MMP28Q9H239 520 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 C6orf106Q9H6K1 298 aaPredicted RBP12.15□□□□□ -0.46
LDLR-207ENST00000558013 FBXW2Q9UKT8 454 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 F5P12259 2224 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 VEGFDO43915 354 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 CCNKO75909 580 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 RB1P06400 928 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 MSL3P1P0C860 447 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 PIPP12273 146 aaPredicted RBP12.15□□□□□ -0.46
LDLR-207ENST00000558013 GSTM5P46439 218 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 PCYT1AP49585 367 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 RAB8AP61006 207 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 TIMM50Q3ZCQ8 353 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 FAM78AQ5JUQ0 283 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 TMEM107Q6UX40 140 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 B3GLCTQ6Y288 498 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 TMIEQ8NEW7 156 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 RGMAQ96B86 450 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 OTUB2Q96DC9 234 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 CNRIP1Q96F85 164 aaPredicted RBP12.15□□□□□ -0.46
LDLR-207ENST00000558013 SLC35G5Q96KT7 338 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 DHRS1Q96LJ7 313 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 DMRTB1Q96MA1 342 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 C12orf66Q96MD2 445 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 ZNF582Q96NG8 517 aaPredicted RBP12.15□□□□□ -0.46
LDLR-207ENST00000558013 FCRL4Q96PJ5 515 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 PHOX2BQ99453 314 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 RACGAP1Q9H0H5 632 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 TP63Q9H3D4 680 aaPredicted RBP12.15□□□□□ -0.46
LDLR-207ENST00000558013 ABCB9Q9NP78 766 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 ACAD8Q9UKU7 415 aa12.15□□□□□ -0.46
LDLR-207ENST00000558013 SPIN1Q9Y657 262 aaPredicted RBP12.15□□□□□ -0.46
LDLR-207ENST00000558013 EDDM13A0A1B0GTR0 161 aa12.15□□□□□ -0.47
LDLR-207ENST00000558013 LRIT2A6NDA9 550 aa12.15□□□□□ -0.47
LDLR-207ENST00000558013 DYRK3O43781 588 aa12.15□□□□□ -0.47
LDLR-207ENST00000558013 ADH1CP00326 375 aa12.15□□□□□ -0.47
LDLR-207ENST00000558013 SOX18P35713 384 aa12.15□□□□□ -0.47
LDLR-207ENST00000558013 BCL6P41182 706 aa12.15□□□□□ -0.47
LDLR-207ENST00000558013 FRKP42685 505 aaPredicted RBP12.15□□□□□ -0.47
LDLR-207ENST00000558013 OR2B6P58173 313 aa12.15□□□□□ -0.47
LDLR-207ENST00000558013 TAS2R38P59533 333 aa12.15□□□□□ -0.47
LDLR-207ENST00000558013 HTRA4P83105 476 aaPredicted RBP12.15□□□□□ -0.47
LDLR-207ENST00000558013 NCF4Q15080 339 aa12.15□□□□□ -0.47
LDLR-207ENST00000558013 SNAPC1Q16533 368 aa12.15□□□□□ -0.47
LDLR-207ENST00000558013 FAM46CQ5VWP2 391 aa12.15□□□□□ -0.47
LDLR-207ENST00000558013 RSBN1Q5VWQ0 802 aaPredicted RBP12.15□□□□□ -0.47
LDLR-207ENST00000558013 LRRTM4Q86VH4 590 aa12.15□□□□□ -0.47
LDLR-207ENST00000558013 OR8D4Q8NGM9 314 aa12.15□□□□□ -0.47
LDLR-207ENST00000558013 CREB3L4Q8TEY5 395 aa12.15□□□□□ -0.47
LDLR-207ENST00000558013 TMEM245Q9H330 911 aa12.15□□□□□ -0.47
LDLR-207ENST00000558013 WASH6PQ9NQA3 447 aa12.15□□□□□ -0.47
LDLR-207ENST00000558013 TXNL4BQ9NX01 149 aaKnown RBP12.15□□□□□ -0.47
LDLR-207ENST00000558013 ENOPH1Q9UHY7 261 aa12.15□□□□□ -0.47
LDLR-207ENST00000558013 SLC27A6Q9Y2P4 619 aa12.15□□□□□ -0.47
LDLR-207ENST00000558013 BOLA1Q9Y3E2 137 aa12.15□□□□□ -0.47
LDLR-207ENST00000558013 RPL36Q9Y3U8 105 aaKnown RBP12.15□□□□□ -0.47
LDLR-207ENST00000558013 INSL6Q9Y581 213 aa12.15□□□□□ -0.47
LDLR-207ENST00000558013 A0A1W2PR48 441 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 MYL12BO14950 172 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 SLITRK5O94991 958 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 SEMA3DO95025 777 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 ERGP11308 486 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 ETV6P41212 452 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 RPS25P62851 125 aaKnown RBP12.14□□□□□ -0.47
LDLR-207ENST00000558013 REEP5Q00765 189 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 HNRNPA0Q13151 305 aaKnown RBP12.14□□□□□ -0.47
LDLR-207ENST00000558013 GPAT3Q53EU6 434 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 TMEM201Q5SNT2 666 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 TMPRSS11AQ6ZMR5 421 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 VRK2Q86Y07 508 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 MORN4Q8NDC4 146 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 OR2A1Q8NGT9 310 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 ARMC5Q96C12 935 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 MND1Q9BWT6 205 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 PRSS16Q9NQE7 514 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 SLC35C2Q9NQQ7 365 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 NDUFB11Q9NX14 153 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 P2RX2Q9UBL9 471 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 NDOR1Q9UHB4 597 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 MOSPD1Q9UJG1 213 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 DNMT3AQ9Y6K1 912 aaPredicted RBP12.14□□□□□ -0.47
LDLR-207ENST00000558013 SCN2AQ99250 2005 aa12.14□□□□□ -0.47
LDLR-207ENST00000558013 A0A087WUU8 490 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms