RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 CPSF4LA6NMK7 179 aaKnown RBP11.66□□□□□ -0.54
LDLR-205ENST00000557933 KPNA3O00505 521 aaPredicted RBP11.66□□□□□ -0.54
LDLR-205ENST00000557933 ZNF197O14709 1029 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 HOXA2O43364 376 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 SOCS5O75159 536 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 TOR1AIP1Q5JTV8 583 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 IDNKQ5T6J7 187 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 LCN1P1Q5VSP4 162 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 MSANTD1Q6ZTZ1 278 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 ESPNLQ6ZVH7 1005 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 OR4N4Q8N0Y3 316 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 SLC37A3Q8NCC5 494 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 POF1BQ8WVV4 589 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 AP2M1Q96CW1 435 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 ZNF582Q96NG8 517 aaPredicted RBP11.66□□□□□ -0.54
LDLR-205ENST00000557933 GDF15Q99988 308 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 TREX2Q9BQ50 279 aaPredicted RBP11.66□□□□□ -0.54
LDLR-205ENST00000557933 MED20Q9H944 212 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 THSD1Q9NS62 852 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 TM7SF3Q9NS93 570 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 CNOT2Q9NZN8 540 aaKnown RBP11.66□□□□□ -0.54
LDLR-205ENST00000557933 ZNF222Q9UK12 451 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 FBXW2Q9UKT8 454 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 RPL36Q9Y3U8 105 aaKnown RBP11.66□□□□□ -0.54
LDLR-205ENST00000557933 CSNK1G3Q9Y6M4 447 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 AKAP8O43823 692 aaKnown RBP11.66□□□□□ -0.54
LDLR-205ENST00000557933 OR3A3P47888 321 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 MAPK12P53778 367 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 SLC16A1P53985 500 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 PCBP3P57721 371 aaKnown RBP11.66□□□□□ -0.54
LDLR-205ENST00000557933 FCRLBQ6BAA4 426 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 C6orf120Q7Z4R8 191 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 OR8H3Q8N146 312 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 OR5AR1Q8NGP9 310 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 TMEM169Q96HH4 297 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 FAM46AQ96IP4 442 aaKnown RBP11.66□□□□□ -0.54
LDLR-205ENST00000557933 FCRL1Q96LA6 429 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 NARFLQ9H6Q4 476 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 EVA1BQ9NVM1 165 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 CORO2BQ9UQ03 480 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 CLCA2Q9UQC9 943 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 SLC9A8Q9Y2E8 581 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 CENPBD1B2RD01 187 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 H7BY64 318 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 LYRM1O43325 122 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 NR2F1P10589 423 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 HOXB3P14651 431 aaPredicted RBP11.65□□□□□ -0.54
LDLR-205ENST00000557933 PPIBP23284 216 aaKnown RBP11.65□□□□□ -0.54
LDLR-205ENST00000557933 GPR4P46093 362 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 RHAGQ02094 409 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 CHRNEQ04844 493 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 MESP2Q0VG99 397 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 ZNF630Q2M218 657 aaPredicted RBP11.65□□□□□ -0.54
LDLR-205ENST00000557933 TMEM215Q68D42 235 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 LAMTOR1Q6IAA8 161 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 DGLUCYQ7Z3D6 616 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 UBE2Q1Q7Z7E8 422 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 CBARPQ8N350 705 aaPredicted RBP11.65□□□□□ -0.54
LDLR-205ENST00000557933 NATD1Q8N6N6 113 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 OR8D4Q8NGM9 314 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 OR8J1Q8NGP2 316 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 OR2A12Q8NGT7 310 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 PRAP1Q96NZ9 151 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 QRFPRQ96P65 431 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 FNDC11Q9BVV2 318 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 BHLHE41Q9C0J9 482 aaPredicted RBP11.65□□□□□ -0.54
LDLR-205ENST00000557933 SAP130Q9H0E3 1048 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 PPIL3Q9H2H8 161 aaKnown RBP11.65□□□□□ -0.54
LDLR-205ENST00000557933 C11orf49Q9H6J7 331 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 MRPL15Q9P015 296 aaKnown RBP11.65□□□□□ -0.54
LDLR-205ENST00000557933 TAC3Q9UHF0 121 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 HCN2Q9UL51 889 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 TRAPPC4Q9Y296 219 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 KCNE3Q9Y6H6 103 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 CHD9Q3L8U1 2897 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 IGLV3-16A0A075B6K0 115 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 NPIPB8E9PQR5 432 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 MAGEB4O15481 346 aaPredicted RBP11.65□□□□□ -0.54
LDLR-205ENST00000557933 FABP7O15540 132 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 SLC6A11P48066 632 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 GIPRP48546 466 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 ASAH1Q13510 395 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 LASP1Q14847 261 aaKnown RBP11.65□□□□□ -0.54
LDLR-205ENST00000557933 NCF4Q15080 339 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 POU4F3Q15319 338 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 WDR45BQ5MNZ6 344 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 PLEKHS1Q5SXH7 462 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 FAM71E1Q6IPT2 247 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 TTC23LQ6PF05 361 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 NR2C2APQ86WQ0 139 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 KIF18BQ86Y91 864 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 KLBQ86Z14 1044 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 RDH10Q8IZV5 341 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 CPA6Q8N4T0 437 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 HCAR2Q8TDS4 363 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 PIGKQ92643 395 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 GCDHQ92947 438 aaPredicted RBP11.65□□□□□ -0.54
LDLR-205ENST00000557933 ISG20L2Q9H9L3 353 aaKnown RBP11.65□□□□□ -0.54
LDLR-205ENST00000557933 NKIRAS2Q9NYR9 191 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 ASF1AQ9Y294 204 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms