RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 FGFR1OP2Q9NVK5 253 aa16.2■□□□□ 0.18
SHMT2-225ENST00000556798 DCTN4Q9UJW0 460 aa16.2■□□□□ 0.18
SHMT2-225ENST00000556798 B3GNT3Q9Y2A9 372 aa16.2■□□□□ 0.18
SHMT2-225ENST00000556798 GPR45Q9Y5Y3 372 aa16.2■□□□□ 0.18
SHMT2-225ENST00000556798 SPENQ96T58 3664 aaKnown RBP16.2■□□□□ 0.18
SHMT2-225ENST00000556798 C2orf92A0A1B0GVN3 265 aa16.19■□□□□ 0.18
SHMT2-225ENST00000556798 E9PBE3 544 aa16.19■□□□□ 0.18
SHMT2-225ENST00000556798 PRAMEF2O60811 474 aa16.19■□□□□ 0.18
SHMT2-225ENST00000556798 VIMP08670 466 aaKnown RBP16.19■□□□□ 0.18
SHMT2-225ENST00000556798 DDX5P17844 614 aaKnown RBP16.19■□□□□ 0.18
SHMT2-225ENST00000556798 GPX3P22352 226 aa16.19■□□□□ 0.18
SHMT2-225ENST00000556798 SOX3P41225 446 aa16.19■□□□□ 0.18
SHMT2-225ENST00000556798 FRKP42685 505 aaPredicted RBP16.19■□□□□ 0.18
SHMT2-225ENST00000556798 TNFSF10P50591 281 aa16.19■□□□□ 0.18
SHMT2-225ENST00000556798 SSR4P51571 173 aa16.19■□□□□ 0.18
SHMT2-225ENST00000556798 MANFP55145 182 aaKnown RBP16.19■□□□□ 0.18
SHMT2-225ENST00000556798 NNATQ16517 81 aa16.19■□□□□ 0.18
SHMT2-225ENST00000556798 PLEKHN1Q494U1 663 aaPredicted RBP16.19■□□□□ 0.18
SHMT2-225ENST00000556798 FHL5Q5TD97 284 aa16.19■□□□□ 0.18
SHMT2-225ENST00000556798 TMEM156Q8N614 296 aa16.19■□□□□ 0.18
SHMT2-225ENST00000556798 Q8NA96 180 aa16.19■□□□□ 0.18
SHMT2-225ENST00000556798 PNPLA2Q96AD5 504 aa16.19■□□□□ 0.18
SHMT2-225ENST00000556798 COQ8BQ96D53 544 aa16.19■□□□□ 0.18
SHMT2-225ENST00000556798 ZBED6CLQ96FA7 236 aaPredicted RBP16.19■□□□□ 0.18
SHMT2-225ENST00000556798 PRPF18Q99633 342 aaKnown RBP16.19■□□□□ 0.18
SHMT2-225ENST00000556798 DUSP26Q9BV47 211 aa16.19■□□□□ 0.18
SHMT2-225ENST00000556798 ITPAQ9BY32 194 aa16.19■□□□□ 0.18
SHMT2-225ENST00000556798 CCDC134Q9H6E4 229 aa16.19■□□□□ 0.18
SHMT2-225ENST00000556798 ATAD3AQ9NVI7 634 aa16.19■□□□□ 0.18
SHMT2-225ENST00000556798 YARS2Q9Y2Z4 477 aaKnown RBP16.19■□□□□ 0.18
SHMT2-225ENST00000556798 UBDO15205 165 aa16.18■□□□□ 0.18
SHMT2-225ENST00000556798 PLOD3O60568 738 aa16.18■□□□□ 0.18
SHMT2-225ENST00000556798 OR6B1O95007 311 aa16.18■□□□□ 0.18
SHMT2-225ENST00000556798 CASRP41180 1078 aa16.18■□□□□ 0.18
SHMT2-225ENST00000556798 CYB561P49447 251 aa16.18■□□□□ 0.18
SHMT2-225ENST00000556798 EMDP50402 254 aa16.18■□□□□ 0.18
SHMT2-225ENST00000556798 NR0B1P51843 470 aaKnown RBP16.18■□□□□ 0.18
SHMT2-225ENST00000556798 SF3A3Q12874 501 aaKnown RBP eCLIP16.18■□□□□ 0.18
SHMT2-225ENST00000556798 ZNF169Q14929 603 aaPredicted RBP16.18■□□□□ 0.18
SHMT2-225ENST00000556798 RPS6KA2Q15349 733 aa16.18■□□□□ 0.18
SHMT2-225ENST00000556798 TLR1Q15399 786 aa16.18■□□□□ 0.18
SHMT2-225ENST00000556798 OR1C1Q15619 314 aa16.18■□□□□ 0.18
SHMT2-225ENST00000556798 HLA-DQA1Q5Y7H0 255 aa16.18■□□□□ 0.18
SHMT2-225ENST00000556798 SPINK14Q6IE38 97 aa16.18■□□□□ 0.18
SHMT2-225ENST00000556798 OR4F3Q6IEY1 312 aa16.18■□□□□ 0.18
SHMT2-225ENST00000556798 ZNF441Q8N8Z8 693 aa16.18■□□□□ 0.18
SHMT2-225ENST00000556798 ASB15Q8WXK1 588 aa16.18■□□□□ 0.18
SHMT2-225ENST00000556798 ADIPOR1Q96A54 375 aa16.18■□□□□ 0.18
SHMT2-225ENST00000556798 ELP4Q96EB1 424 aa16.18■□□□□ 0.18
SHMT2-225ENST00000556798 HES7Q9BYE0 225 aa16.18■□□□□ 0.18
SHMT2-225ENST00000556798 BHLHE41Q9C0J9 482 aaPredicted RBP16.18■□□□□ 0.18
SHMT2-225ENST00000556798 ACSS1Q9NUB1 689 aaPredicted RBP16.18■□□□□ 0.18
SHMT2-225ENST00000556798 DDX18Q9NVP1 670 aaKnown RBP16.18■□□□□ 0.18
SHMT2-225ENST00000556798 LRFN1Q9P244 771 aa16.18■□□□□ 0.18
SHMT2-225ENST00000556798 A0A0G2JND7 137 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 A0A1W2PRB8 838 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 UPK1AO00322 258 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 PLOD2O00469 737 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 NEURL1O76050 574 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 SLITRK5O94991 958 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 NADKO95544 446 aaPredicted RBP16.17■□□□□ 0.18
SHMT2-225ENST00000556798 C6orf47O95873 294 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 IDO1P14902 403 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 IL12AP29459 219 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 TRHRP34981 398 aaPredicted RBP16.17■□□□□ 0.18
SHMT2-225ENST00000556798 HLCSP50747 726 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 CLNS1AP54105 237 aaKnown RBP16.17■□□□□ 0.18
SHMT2-225ENST00000556798 GYS2P54840 703 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 FAM174BQ3ZCQ3 159 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 PDCD4Q53EL6 469 aaKnown RBP16.17■□□□□ 0.18
SHMT2-225ENST00000556798 PIGGQ5H8A4 983 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 SPANXN4Q5MJ08 99 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 CGB2Q6NT52 195 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 TMEM64Q6YI46 380 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 SZRD1Q7Z422 152 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 CAMKMTQ7Z624 323 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 ZNF227Q86WZ6 799 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 CLECL1Q8IZS7 167 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 MDS2Q8NDY4 140 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 SLC22A8Q8TCC7 542 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 ERP27Q96DN0 273 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 CCDC28BQ9BUN5 200 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 CLMPQ9H6B4 373 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 FOLH1BQ9HBA9 442 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 KLHL1Q9NR64 748 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 PRODH2Q9UF12 536 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 ANAPC2Q9UJX6 822 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 MAPRE3Q9UPY8 281 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 CFL2Q9Y281 166 aa16.17■□□□□ 0.18
SHMT2-225ENST00000556798 HEMK1Q9Y5R4 338 aaPredicted RBP16.17■□□□□ 0.18
SHMT2-225ENST00000556798 A0A087WV62 115 aa16.16■□□□□ 0.18
SHMT2-225ENST00000556798 TRAV17A0A0B4J275 112 aa16.16■□□□□ 0.18
SHMT2-225ENST00000556798 A8MVJ9 347 aa16.16■□□□□ 0.18
SHMT2-225ENST00000556798 SORBS2O94875 1100 aaKnown RBP16.16■□□□□ 0.18
SHMT2-225ENST00000556798 ABCB1P08183 1280 aaPredicted RBP16.16■□□□□ 0.18
SHMT2-225ENST00000556798 KIR3DL1P43629 444 aa16.16■□□□□ 0.18
SHMT2-225ENST00000556798 DGKQP52824 942 aa16.16■□□□□ 0.18
SHMT2-225ENST00000556798 WNT3P56703 355 aa16.16■□□□□ 0.18
SHMT2-225ENST00000556798 PHC1P78364 1004 aa16.16■□□□□ 0.18
SHMT2-225ENST00000556798 ZNF155Q12901 538 aaPredicted RBP16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms