RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 MLLT3P42568 568 aaPredicted RBP13.8□□□□□ -0.2
VPS33B-205ENST00000556096 ARRB1P49407 418 aaPredicted RBP13.8□□□□□ -0.2
VPS33B-205ENST00000556096 HMGA2P52926 109 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 GFERP55789 205 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 SHC2P98077 582 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 KCNAB2Q13303 367 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 APOFQ13790 326 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 NR1D2Q14995 579 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 SHBQ15464 509 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 INAVAQ3KP66 663 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 TCTE1Q5JU00 501 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 TCEAL6Q6IPX3 200 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 FAHD1Q6P587 224 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 TTC33Q6PID6 262 aaPredicted RBP13.8□□□□□ -0.2
VPS33B-205ENST00000556096 CYP4Z1Q86W10 505 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 OR4N5Q8IXE1 308 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 OR7G2Q8NG99 324 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 GPR32P1Q8NGA4 272 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 OR9A4Q8NGU2 314 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 NCSTNQ92542 709 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 PROX1Q92786 737 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 TCEAL3Q969E4 200 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 COL26A1Q96A83 441 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 ZNF354BQ96LW1 612 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 MS4A4EQ96PG1 132 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 PIP5K1AQ99755 562 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 ENAMQ9NRM1 1142 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 DDX18Q9NVP1 670 aaKnown RBP13.8□□□□□ -0.2
VPS33B-205ENST00000556096 CALML5Q9NZT1 146 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 SH3GLB1Q9Y371 365 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 FAM32AQ9Y421 112 aaKnown RBP13.8□□□□□ -0.2
VPS33B-205ENST00000556096 LYVE1Q9Y5Y7 322 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 A0A087WV62 115 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 IGHV1OR21-1A0A087WYE8 117 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 IGHV5-51A0A0C4DH38 117 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 BLACEA4D250 179 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 TRIM64A6NGJ6 449 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 A8MVJ9 347 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 TNFRSF11BO00300 401 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 CHST10O43529 356 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 FGF17O60258 216 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 RDH16O75452 317 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 JRKO75564 520 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 ZBTB11O95625 1053 aaPredicted RBP13.79□□□□□ -0.2
VPS33B-205ENST00000556096 AGR2O95994 175 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 CLPTM1O96005 669 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 ITGAMP11215 1152 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 ALDH4A1P30038 563 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 RPS6KA3P51812 740 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 EMP3P54852 163 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 FUT5Q11128 374 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 PUM1Q14671 1186 aaKnown RBP eCLIP13.79□□□□□ -0.2
VPS33B-205ENST00000556096 ZNF628Q5EBL2 1059 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 CDC73Q6P1J9 531 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 ZNF605Q86T29 641 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 SLC35F3Q8IY50 421 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 TTC29Q8NA56 475 aaPredicted RBP13.79□□□□□ -0.2
VPS33B-205ENST00000556096 TMEM52Q8NDY8 209 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 PIK3C3Q8NEB9 887 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 OR4C15Q8NGM1 316 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 ADAMTS18Q8TE60 1221 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 AHCYL2Q96HN2 611 aaKnown RBP13.79□□□□□ -0.2
VPS33B-205ENST00000556096 MUS81Q96NY9 551 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 COL21A1Q96P44 957 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 TRNT1Q96Q11 434 aaKnown RBP13.79□□□□□ -0.2
VPS33B-205ENST00000556096 YIPF4Q9BSR8 244 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 FAM192AQ9GZU8 254 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 GIN1Q9NXP7 522 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 SEC14L3Q9UDX4 400 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 C19orf53Q9UNZ5 99 aaPredicted RBP13.79□□□□□ -0.2
VPS33B-205ENST00000556096 TESMINQ9Y4I5 508 aa13.79□□□□□ -0.2
VPS33B-205ENST00000556096 FITM1A5D6W6 292 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 FAM227AF5H4B4 570 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 FOXS1O43638 330 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 BMP10O95393 424 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 NSA2O95478 260 aaKnown RBP13.78□□□□□ -0.2
VPS33B-205ENST00000556096 CFIP05156 583 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 CHRM4P08173 479 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 CDH2P19022 906 aaPredicted RBP13.78□□□□□ -0.2
VPS33B-205ENST00000556096 SOX18P35713 384 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 MPLP40238 635 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 RPL5P46777 297 aaKnown RBP13.78□□□□□ -0.2
VPS33B-205ENST00000556096 PPM1FP49593 454 aaPredicted RBP13.78□□□□□ -0.2
VPS33B-205ENST00000556096 OR1D5P58170 312 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 GPLD1P80108 840 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 IL18R1Q13478 541 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 ATAD3BQ5T9A4 648 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 FHL5Q5TD97 284 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 PEAR1Q5VY43 1037 aaPredicted RBP13.78□□□□□ -0.2
VPS33B-205ENST00000556096 MFSD12Q6NUT3 480 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 OFCC1Q8IZS5 231 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 C8orf59Q8N0T1 100 aaPredicted RBP13.78□□□□□ -0.2
VPS33B-205ENST00000556096 TSPAN14Q8NG11 270 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 ZNF675Q8TD23 568 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 GIPC3Q8TF64 312 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 ANKRD9Q96BM1 317 aaPredicted RBP13.78□□□□□ -0.2
VPS33B-205ENST00000556096 RSPO3Q9BXY4 272 aaPredicted RBP13.78□□□□□ -0.2
VPS33B-205ENST00000556096 SOHLH2Q9NX45 425 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 SEMA5BQ9P283 1151 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 CLCA2Q9UQC9 943 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms