RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 C1QL3Q5VWW1 255 aa12.65□□□□□ -0.38
SHMT2-219ENST00000555563 DND1Q8IYX4 353 aaKnown RBP12.65□□□□□ -0.38
SHMT2-219ENST00000555563 FAM9CQ8IZT9 166 aa12.65□□□□□ -0.38
SHMT2-219ENST00000555563 TAGAPQ8N103 731 aa12.65□□□□□ -0.38
SHMT2-219ENST00000555563 FAM13CQ8NE31 585 aa12.65□□□□□ -0.38
SHMT2-219ENST00000555563 C17orf47Q8NEP4 570 aa12.65□□□□□ -0.38
SHMT2-219ENST00000555563 OR2M7Q8NG81 312 aa12.65□□□□□ -0.38
SHMT2-219ENST00000555563 OR10G3Q8NGC4 313 aa12.65□□□□□ -0.38
SHMT2-219ENST00000555563 SSC4DQ8WTU2 575 aa12.65□□□□□ -0.38
SHMT2-219ENST00000555563 KAT2AQ92830 837 aa12.65□□□□□ -0.38
SHMT2-219ENST00000555563 TP53INP1Q96A56 240 aa12.65□□□□□ -0.38
SHMT2-219ENST00000555563 EGLN2Q96KS0 407 aa12.65□□□□□ -0.38
SHMT2-219ENST00000555563 ITPAQ9BY32 194 aa12.65□□□□□ -0.38
SHMT2-219ENST00000555563 STMN4Q9H169 189 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-219ENST00000555563 NXF5Q9H1B4 397 aaKnown RBP12.65□□□□□ -0.38
SHMT2-219ENST00000555563 ZNF395Q9H8N7 513 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-219ENST00000555563 ANKRA2Q9H9E1 313 aa12.65□□□□□ -0.38
SHMT2-219ENST00000555563 SACM1LQ9NTJ5 587 aa12.65□□□□□ -0.38
SHMT2-219ENST00000555563 GIMAP2Q9UG22 337 aa12.65□□□□□ -0.38
SHMT2-219ENST00000555563 WBP11Q9Y2W2 641 aaKnown RBP12.65□□□□□ -0.38
SHMT2-219ENST00000555563 CHCHD2Q9Y6H1 151 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-219ENST00000555563 HIVEP3Q5T1R4 2406 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 ZGRF1Q86YA3 2104 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 EXPH5Q8NEV8 1989 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 TMEM114B3SHH9 223 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 ASNA1O43681 348 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 ITM2AO43736 263 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 SLC19A2O60779 497 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 LDLRP01130 860 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 P04436 131 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 PIGAP37287 484 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 DNASE1L1P49184 302 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 CASP8Q14790 479 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 KRTCAP3Q53RY4 240 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 CMPK2Q5EBM0 449 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 PRAMEF20Q5VT98 475 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 GK5Q6ZS86 529 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 FAM47EQ6ZV65 393 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 HOMEZQ8IX15 550 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 PRR22Q8IZ63 422 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 FBXW8Q8N3Y1 598 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 ANKRD42Q8N9B4 389 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 OR5M3Q8NGP4 307 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 CLHC1Q8NHS4 586 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 PAQR8Q8TEZ7 354 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 GFM2Q969S9 779 aaKnown RBP12.64□□□□□ -0.39
SHMT2-219ENST00000555563 MAGED4Q96JG8 741 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 C3orf30Q96M34 536 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 TSSK3Q96PN8 268 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 BBS4Q96RK4 519 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 FAM173AQ9BQD7 235 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 RYDENQ9NUL5 291 aaKnown RBP12.64□□□□□ -0.39
SHMT2-219ENST00000555563 TAS2R7Q9NYW3 318 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 TMED5Q9Y3A6 229 aa12.64□□□□□ -0.39
SHMT2-219ENST00000555563 POLEQ07864 2286 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 DOPEY2Q9Y3R5 2298 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 RP1L1Q8IWN7 2480 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-219ENST00000555563 ATP6AP2A0A1C7CYW4 349 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 TMEM120BA0PK00 339 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 FAM166BA8MTA8 275 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 MYO1GB0I1T2 1018 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 ZNHIT1O43257 154 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 LRRTM2O43300 516 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 HS6ST1O60243 411 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 NME6O75414 186 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-219ENST00000555563 ATP6AP2O75787 350 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 LRATO95237 230 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 JUNP05412 331 aaKnown RBP12.63□□□□□ -0.39
SHMT2-219ENST00000555563 CNR1P21554 472 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 BGNP21810 368 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 NTSP30990 170 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 MPIP34949 423 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 MC3RP41968 323 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 EMDP50402 254 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 NCBP2P52298 156 aaKnown RBP eCLIP12.63□□□□□ -0.39
SHMT2-219ENST00000555563 NRG3P56975 720 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 FBXW4P57775 412 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 ABCE1P61221 599 aaKnown RBP12.63□□□□□ -0.39
SHMT2-219ENST00000555563 PLGLB1Q02325 96 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 RBPJQ06330 500 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 FOXO1Q12778 655 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 RPS6KA2Q15349 733 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 NTRK2Q16620 822 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 SLC22A10Q63ZE4 541 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 ANKRD26P1Q6NSI1 321 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 FJX1Q86VR8 437 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 CHERPQ8IWX8 916 aaKnown RBP12.63□□□□□ -0.39
SHMT2-219ENST00000555563 GHDCQ8N2G8 530 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 ZNF781Q8N8C0 355 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 OR7G2Q8NG99 324 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 TLCD1Q96CP7 247 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 ERP27Q96DN0 273 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 PPP3R2Q96LZ3 170 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 PSMG3-AS1Q96PY0 264 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 SORT1Q99523 831 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 TTTY12Q9BZ98 90 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 C20orf27Q9GZN8 174 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 GLIPR2Q9H4G4 154 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 TMBIM4Q9HC24 238 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 TUBA8Q9NY65 449 aaPredicted RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms