RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 RPS4XP62701 263 aaKnown RBP2.54□□□□□ -2
SCFD1-216ENST00000555550 CKAP4Q07065 602 aaKnown RBP2.54□□□□□ -2
SCFD1-216ENST00000555550 KLF5Q13887 457 aaPredicted RBP2.54□□□□□ -2
SCFD1-216ENST00000555550 HAGHQ16775 308 aa2.54□□□□□ -2
SCFD1-216ENST00000555550 KBTBD12Q3ZCT8 623 aa2.54□□□□□ -2
SCFD1-216ENST00000555550 ZNF789Q5FWF6 425 aa2.54□□□□□ -2
SCFD1-216ENST00000555550 IGFL2Q6UWQ7 119 aa2.54□□□□□ -2
SCFD1-216ENST00000555550 NHLRC1Q6VVB1 395 aa2.54□□□□□ -2
SCFD1-216ENST00000555550 STOX1Q6ZVD7 989 aa2.54□□□□□ -2
SCFD1-216ENST00000555550 PRSS48Q7RTY5 328 aa2.54□□□□□ -2
SCFD1-216ENST00000555550 CEND1Q8N111 149 aa2.54□□□□□ -2
SCFD1-216ENST00000555550 C14orf178Q8N769 122 aaPredicted RBP2.54□□□□□ -2
SCFD1-216ENST00000555550 CCDC26Q8TAB7 109 aa2.54□□□□□ -2
SCFD1-216ENST00000555550 RFESDQ8TAC1 157 aa2.54□□□□□ -2
SCFD1-216ENST00000555550 RDH11Q8TC12 318 aa2.54□□□□□ -2
SCFD1-216ENST00000555550 GLYATL1Q969I3 302 aa2.54□□□□□ -2
SCFD1-216ENST00000555550 C9orf85Q96MD7 179 aa2.54□□□□□ -2
SCFD1-216ENST00000555550 GPR174Q9BXC1 333 aa2.54□□□□□ -2
SCFD1-216ENST00000555550 ELOVL4Q9GZR5 314 aa2.54□□□□□ -2
SCFD1-216ENST00000555550 GANQ9H2C0 597 aa2.54□□□□□ -2
SCFD1-216ENST00000555550 ESM1Q9NQ30 184 aa2.54□□□□□ -2
SCFD1-216ENST00000555550 TUBGCP4Q9UGJ1 667 aa2.54□□□□□ -2
SCFD1-216ENST00000555550 RNF115Q9Y4L5 304 aa2.54□□□□□ -2
SCFD1-216ENST00000555550 A0A0A6YYD4 124 aa2.53□□□□□ -2
SCFD1-216ENST00000555550 LCMT2O60294 686 aaKnown RBP2.53□□□□□ -2
SCFD1-216ENST00000555550 PDE5AO76074 875 aa2.53□□□□□ -2
SCFD1-216ENST00000555550 SLC2A10O95528 541 aa2.53□□□□□ -2
SCFD1-216ENST00000555550 HOXC4P09017 264 aaPredicted RBP2.53□□□□□ -2
SCFD1-216ENST00000555550 ALPIP09923 528 aa2.53□□□□□ -2
SCFD1-216ENST00000555550 CCDC166P0CW27 439 aa2.53□□□□□ -2
SCFD1-216ENST00000555550 PTPN4P29074 926 aa2.53□□□□□ -2
SCFD1-216ENST00000555550 TRIM23P36406 574 aa2.53□□□□□ -2
SCFD1-216ENST00000555550 MEP1BQ16820 701 aa2.53□□□□□ -2
SCFD1-216ENST00000555550 ADAMTSL5Q6ZMM2 481 aa2.53□□□□□ -2
SCFD1-216ENST00000555550 SYCP3Q8IZU3 236 aa2.53□□□□□ -2
SCFD1-216ENST00000555550 CADM2Q8N3J6 435 aa2.53□□□□□ -2
SCFD1-216ENST00000555550 C16orf74Q96GX8 76 aa2.53□□□□□ -2
SCFD1-216ENST00000555550 RPGRIP1Q96KN7 1286 aa2.53□□□□□ -2
SCFD1-216ENST00000555550 IMMP1LQ96LU5 166 aa2.53□□□□□ -2
SCFD1-216ENST00000555550 DDX50Q9BQ39 737 aaKnown RBP2.53□□□□□ -2
SCFD1-216ENST00000555550 NMUR2Q9GZQ4 415 aa2.53□□□□□ -2
SCFD1-216ENST00000555550 ZNF350Q9GZX5 532 aa2.53□□□□□ -2
SCFD1-216ENST00000555550 GRPEL1Q9HAV7 217 aa2.53□□□□□ -2
SCFD1-216ENST00000555550 DDX28Q9NUL7 540 aaKnown RBP2.53□□□□□ -2
SCFD1-216ENST00000555550 TMEM9Q9P0T7 183 aa2.53□□□□□ -2
SCFD1-216ENST00000555550 APOBEC3BQ9UH17 382 aaKnown RBP2.53□□□□□ -2
SCFD1-216ENST00000555550 IGLV8-61A0A075B6I0 122 aa2.52□□□□□ -2.01
SCFD1-216ENST00000555550 A4D1N5 150 aa2.52□□□□□ -2.01
SCFD1-216ENST00000555550 EI24O14681 340 aa2.52□□□□□ -2.01
SCFD1-216ENST00000555550 SH2D1BO14796 132 aa2.52□□□□□ -2.01
SCFD1-216ENST00000555550 REC8O95072 547 aa2.52□□□□□ -2.01
SCFD1-216ENST00000555550 OAS1P00973 400 aaKnown RBP2.52□□□□□ -2.01
SCFD1-216ENST00000555550 IGLV1-47P01700 117 aa2.52□□□□□ -2.01
SCFD1-216ENST00000555550 CT45A10P0DMU9 189 aa2.52□□□□□ -2.01
SCFD1-216ENST00000555550 GHRP10912 638 aa2.52□□□□□ -2.01
SCFD1-216ENST00000555550 PSMB1P20618 241 aaKnown RBP2.52□□□□□ -2.01
SCFD1-216ENST00000555550 SAA4P35542 130 aa2.52□□□□□ -2.01
SCFD1-216ENST00000555550 ACADSBP45954 432 aa2.52□□□□□ -2.01
SCFD1-216ENST00000555550 NT5C2P49902 561 aa2.52□□□□□ -2.01
SCFD1-216ENST00000555550 ZNF131P52739 623 aa2.52□□□□□ -2.01
SCFD1-216ENST00000555550 VCPP55072 806 aaKnown RBP2.52□□□□□ -2.01
SCFD1-216ENST00000555550 SNU13P55769 128 aaKnown RBP2.52□□□□□ -2.01
SCFD1-216ENST00000555550 KRT31Q15323 416 aa2.52□□□□□ -2.01
SCFD1-216ENST00000555550 STXBP2Q15833 593 aa2.52□□□□□ -2.01
SCFD1-216ENST00000555550 SHROOM1Q2M3G4 852 aaPredicted RBP2.52□□□□□ -2.01
SCFD1-216ENST00000555550 KCTD11Q693B1 232 aa2.52□□□□□ -2.01
SCFD1-216ENST00000555550 CDC42EP5Q6NZY7 148 aa2.52□□□□□ -2.01
SCFD1-216ENST00000555550 PIWIL3Q7Z3Z3 882 aaKnown RBP2.52□□□□□ -2.01
SCFD1-216ENST00000555550 MCOLN2Q8IZK6 566 aa2.52□□□□□ -2.01
SCFD1-216ENST00000555550 RNF175Q8N4F7 328 aa2.52□□□□□ -2.01
SCFD1-216ENST00000555550 MRPL53Q96EL3 112 aaKnown RBP2.52□□□□□ -2.01
SCFD1-216ENST00000555550 CFAP36Q96G28 342 aa2.52□□□□□ -2.01
SCFD1-216ENST00000555550 TECTBQ96PL2 329 aa2.52□□□□□ -2.01
SCFD1-216ENST00000555550 DCLRE1BQ9H816 532 aa2.52□□□□□ -2.01
SCFD1-216ENST00000555550 NRN1Q9NPD7 142 aa2.52□□□□□ -2.01
SCFD1-216ENST00000555550 CENPMQ9NSP4 180 aa2.52□□□□□ -2.01
SCFD1-216ENST00000555550 ABCB8Q9NUT2 735 aa2.52□□□□□ -2.01
SCFD1-216ENST00000555550 LEF1Q9UJU2 399 aaPredicted RBP2.52□□□□□ -2.01
SCFD1-216ENST00000555550 FLVCR1Q9Y5Y0 555 aa2.52□□□□□ -2.01
SCFD1-216ENST00000555550 A0A0A6YYC8 382 aaPredicted RBP2.51□□□□□ -2.01
SCFD1-216ENST00000555550 FAM231BA6NCW3 169 aa2.51□□□□□ -2.01
SCFD1-216ENST00000555550 I3L1I5 382 aaPredicted RBP2.51□□□□□ -2.01
SCFD1-216ENST00000555550 NUDT21O43809 227 aaKnown RBP2.51□□□□□ -2.01
SCFD1-216ENST00000555550 TYROBPO43914 113 aa2.51□□□□□ -2.01
SCFD1-216ENST00000555550 SERF1AO75920 110 aa2.51□□□□□ -2.01
SCFD1-216ENST00000555550 HSPB1P04792 205 aaKnown RBP2.51□□□□□ -2.01
SCFD1-216ENST00000555550 WNT2P09544 360 aa2.51□□□□□ -2.01
SCFD1-216ENST00000555550 ZNF853P0CG23 659 aa2.51□□□□□ -2.01
SCFD1-216ENST00000555550 CYP3A5P20815 502 aa2.51□□□□□ -2.01
SCFD1-216ENST00000555550 OR3A4PP47883 348 aa2.51□□□□□ -2.01
SCFD1-216ENST00000555550 SERPINH1P50454 418 aaKnown RBP2.51□□□□□ -2.01
SCFD1-216ENST00000555550 DIO3P55073 304 aa2.51□□□□□ -2.01
SCFD1-216ENST00000555550 HERV-K104P63124 156 aa2.51□□□□□ -2.01
SCFD1-216ENST00000555550 ASIC1P78348 528 aa2.51□□□□□ -2.01
SCFD1-216ENST00000555550 YWHAHQ04917 246 aaPredicted RBP2.51□□□□□ -2.01
SCFD1-216ENST00000555550 ZNF33BQ06732 778 aa2.51□□□□□ -2.01
SCFD1-216ENST00000555550 HKDC1Q2TB90 917 aa2.51□□□□□ -2.01
SCFD1-216ENST00000555550 IFI44LQ53G44 452 aa2.51□□□□□ -2.01
SCFD1-216ENST00000555550 STHQ8IWL8 128 aa2.51□□□□□ -2.01
SCFD1-216ENST00000555550 GPR65Q8IYL9 337 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms