RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 PAPOLBQ9NRJ5 636 aaKnown RBP24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 GIN1Q9NXP7 522 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 SCN3AQ9NY46 2000 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 POFUT2Q9Y2G5 429 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 SIT1Q9Y3P8 196 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa24.71■■□□□ 1.55
CCDC88C-205ENST00000553403 HCRTR1O43613 425 aa24.71■■□□□ 1.55
CCDC88C-205ENST00000553403 CCNB2O95067 398 aa24.71■■□□□ 1.55
CCDC88C-205ENST00000553403 AGR2O95994 175 aa24.71■■□□□ 1.55
CCDC88C-205ENST00000553403 CYP4B1P13584 511 aa24.71■■□□□ 1.55
CCDC88C-205ENST00000553403 C21orf59P57076 290 aa24.71■■□□□ 1.55
CCDC88C-205ENST00000553403 ZXDAP98168 799 aa24.71■■□□□ 1.55
CCDC88C-205ENST00000553403 IL5RAQ01344 420 aa24.71■■□□□ 1.55
CCDC88C-205ENST00000553403 CDK5R2Q13319 367 aa24.71■■□□□ 1.55
CCDC88C-205ENST00000553403 C14orf28Q4W4Y0 310 aa24.71■■□□□ 1.55
CCDC88C-205ENST00000553403 GPAT3Q53EU6 434 aa24.71■■□□□ 1.55
CCDC88C-205ENST00000553403 COLEC12Q5KU26 742 aa24.71■■□□□ 1.55
CCDC88C-205ENST00000553403 CDC73Q6P1J9 531 aa24.71■■□□□ 1.55
CCDC88C-205ENST00000553403 OR4N5Q8IXE1 308 aa24.71■■□□□ 1.55
CCDC88C-205ENST00000553403 TMEFF1Q8IYR6 380 aa24.71■■□□□ 1.55
CCDC88C-205ENST00000553403 PHF10Q8WUB8 498 aaKnown RBP24.71■■□□□ 1.55
CCDC88C-205ENST00000553403 ZNF566Q969W8 418 aa24.71■■□□□ 1.55
CCDC88C-205ENST00000553403 OTUB1Q96FW1 271 aaPredicted RBP24.71■■□□□ 1.55
CCDC88C-205ENST00000553403 GPR75O95800 540 aa24.7■■□□□ 1.54
CCDC88C-205ENST00000553403 CCDC159P0C7I6 412 aa24.7■■□□□ 1.54
CCDC88C-205ENST00000553403 PAX7P23759 505 aa24.7■■□□□ 1.54
CCDC88C-205ENST00000553403 ZNF628Q5EBL2 1059 aa24.7■■□□□ 1.54
CCDC88C-205ENST00000553403 WDR45BQ5MNZ6 344 aa24.7■■□□□ 1.54
CCDC88C-205ENST00000553403 BROXQ5VW32 411 aa24.7■■□□□ 1.54
CCDC88C-205ENST00000553403 LAIR2Q6ISS4 152 aa24.7■■□□□ 1.54
CCDC88C-205ENST00000553403 MFSD12Q6NUT3 480 aa24.7■■□□□ 1.54
CCDC88C-205ENST00000553403 COL26A1Q96A83 441 aa24.7■■□□□ 1.54
CCDC88C-205ENST00000553403 MAP3K3Q99759 626 aa24.7■■□□□ 1.54
CCDC88C-205ENST00000553403 PINK1Q9BXM7 581 aa24.7■■□□□ 1.54
CCDC88C-205ENST00000553403 EQTNQ9NQ60 294 aa24.7■■□□□ 1.54
CCDC88C-205ENST00000553403 STARD5Q9NSY2 213 aa24.7■■□□□ 1.54
CCDC88C-205ENST00000553403 KCNE3Q9Y6H6 103 aa24.7■■□□□ 1.54
CCDC88C-205ENST00000553403 CEPT1Q9Y6K0 416 aa24.7■■□□□ 1.54
CCDC88C-205ENST00000553403 TMEM131Q92545 1883 aa24.7■■□□□ 1.54
CCDC88C-205ENST00000553403 CASC3O15234 703 aaKnown RBP24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 PIAS2O75928 621 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 ATP1B1P05026 303 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 SMIM11AP58511 58 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 SHC2P98077 582 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 DEFB133Q30KQ1 61 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 DEFB110Q30KQ9 67 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 C6orf132Q5T0Z8 1188 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 TCTN3Q6NUS6 607 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 NIPAL1Q6NVV3 410 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 OR5T3Q8NGG3 340 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 ADAMTS15Q8TE58 950 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 ALPK1Q96QP1 1244 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 RAB33BQ9H082 229 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 ACAD8Q9UKU7 415 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 A0A087WV62 115 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 FFAR1O14842 300 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 PCDH17O14917 1159 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 DCNP07585 359 aaKnown RBP24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 EEF1B2P24534 225 aaKnown RBP24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 CSNK1EP49674 416 aaKnown RBP24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 EPHA4P54764 986 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 NUP107P57740 925 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 RPP38P78345 283 aaKnown RBP24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 GANABQ14697 944 aaKnown RBP24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 NDUFA9Q16795 377 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 FAM214AQ32MH5 1076 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 ZBED5Q49AG3 693 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 HEPHL1Q6MZM0 1159 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 FAM111BQ6SJ93 734 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 TAGAPQ8N103 731 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 TMIGD2Q96BF3 282 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 HRASLS5Q96KN8 279 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 CHRNA10Q9GZZ6 450 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 ANKRA2Q9H9E1 313 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 ZNF556Q9HAH1 456 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 EPHA6Q9UF33 1036 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 C19orf53Q9UNZ5 99 aaPredicted RBP24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 SLC9A8Q9Y2E8 581 aa24.69■■□□□ 1.54
CCDC88C-205ENST00000553403 CEP192Q8TEP8 1941 aa24.68■■□□□ 1.54
CCDC88C-205ENST00000553403 SGK494L7N484 410 aa24.68■■□□□ 1.54
CCDC88C-205ENST00000553403 SLC1A7O00341 560 aa24.68■■□□□ 1.54
CCDC88C-205ENST00000553403 BCAT2O15382 392 aaPredicted RBP24.68■■□□□ 1.54
CCDC88C-205ENST00000553403 FGF17O60258 216 aa24.68■■□□□ 1.54
CCDC88C-205ENST00000553403 ABCB7O75027 752 aa24.68■■□□□ 1.54
CCDC88C-205ENST00000553403 LGI1O95970 557 aa24.68■■□□□ 1.54
CCDC88C-205ENST00000553403 TTKP33981 857 aa24.68■■□□□ 1.54
CCDC88C-205ENST00000553403 AFF3P51826 1226 aaKnown RBP24.68■■□□□ 1.54
CCDC88C-205ENST00000553403 CXCR4P61073 352 aa24.68■■□□□ 1.54
CCDC88C-205ENST00000553403 SKP1P63208 163 aa24.68■■□□□ 1.54
CCDC88C-205ENST00000553403 FHL5Q5TD97 284 aa24.68■■□□□ 1.54
CCDC88C-205ENST00000553403 GPR141Q7Z602 305 aa24.68■■□□□ 1.54
CCDC88C-205ENST00000553403 TMEM52Q8NDY8 209 aa24.68■■□□□ 1.54
CCDC88C-205ENST00000553403 OR4D11Q8NGI4 311 aa24.68■■□□□ 1.54
CCDC88C-205ENST00000553403 SLC35A4Q96G79 324 aa24.68■■□□□ 1.54
CCDC88C-205ENST00000553403 ZNF285Q96NJ3 590 aa24.68■■□□□ 1.54
CCDC88C-205ENST00000553403 SLC38A1Q9H2H9 487 aa24.68■■□□□ 1.54
CCDC88C-205ENST00000553403 RLIMQ9NVW2 624 aa24.68■■□□□ 1.54
CCDC88C-205ENST00000553403 ENOPH1Q9UHY7 261 aa24.68■■□□□ 1.54
CCDC88C-205ENST00000553403 COMMD3-BMI1R4GMX3 469 aa24.68■■□□□ 1.54
CCDC88C-205ENST00000553403 DSPPQ9NZW4 1301 aa24.68■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms