RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 PIWIL2Q8TC59 973 aaKnown RBP13.06□□□□□ -0.32
PTCH1-226ENST00000553011 CPT1CQ8TCG5 803 aa13.06□□□□□ -0.32
PTCH1-226ENST00000553011 CKAP2Q8WWK9 683 aa13.06□□□□□ -0.32
PTCH1-226ENST00000553011 ASB15Q8WXK1 588 aa13.06□□□□□ -0.32
PTCH1-226ENST00000553011 SNRNP40Q96DI7 357 aaKnown RBP13.06□□□□□ -0.32
PTCH1-226ENST00000553011 MTERF3Q96E29 417 aa13.06□□□□□ -0.32
PTCH1-226ENST00000553011 C7orf26Q96N11 449 aa13.06□□□□□ -0.32
PTCH1-226ENST00000553011 AMDHD1Q96NU7 426 aa13.06□□□□□ -0.32
PTCH1-226ENST00000553011 TRIM45Q9H8W5 580 aaPredicted RBP13.06□□□□□ -0.32
PTCH1-226ENST00000553011 ASIC5Q9NY37 505 aa13.06□□□□□ -0.32
PTCH1-226ENST00000553011 MAP10Q9P2G4 905 aa13.06□□□□□ -0.32
PTCH1-226ENST00000553011 ATP6V1HQ9UI12 483 aa13.06□□□□□ -0.32
PTCH1-226ENST00000553011 ZNF407Q9C0G0 2248 aa13.06□□□□□ -0.32
PTCH1-226ENST00000553011 FLNCQ14315 2725 aa13.06□□□□□ -0.32
PTCH1-226ENST00000553011 GTF3C1Q12789 2109 aa13.06□□□□□ -0.32
PTCH1-226ENST00000553011 TRPC5OSA6NMA1 111 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 A8MVJ9 347 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 SLCO1B7G3V0H7 640 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 CDK2AP1O14519 115 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 ZNF195O14628 629 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 VPS4BO75351 444 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 LAMP1P11279 417 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 CD46P15529 392 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 GPX3P22352 226 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 MC3RP41968 323 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 EMDP50402 254 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 NR0B1P51843 470 aaKnown RBP13.05□□□□□ -0.32
PTCH1-226ENST00000553011 HSPB3Q12988 150 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 IGFBP7Q16270 282 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 SLC9B1Q4ZJI4 515 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 FHL5Q5TD97 284 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 HLA-DQA1Q5Y7H0 255 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 SLC25A25Q6KCM7 469 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 OGFOD2Q6N063 350 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 TMEM107Q6UX40 140 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 LYPD8Q6UX82 237 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 IL20RBQ6UXL0 311 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 TMEM64Q6YI46 380 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 FAM47EQ6ZV65 393 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 MDGA2Q7Z553 956 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 R3HCC1LQ7Z5L2 792 aaKnown RBP13.05□□□□□ -0.32
PTCH1-226ENST00000553011 RIMKLAQ8IXN7 391 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 HORMAD2Q8N7B1 307 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 ADIPOR1Q96A54 375 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 SCMH1Q96GD3 660 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 MAGEB18Q96M61 343 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 C5orf34Q96MH7 638 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 TAAR6Q96RI8 345 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 ITPAQ9BY32 194 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 ASF1BQ9NVP2 202 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 HPF1Q9NWY4 346 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 ERVK-11Q9UQG0 969 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 USH1CQ9Y6N9 552 aa13.05□□□□□ -0.32
PTCH1-226ENST00000553011 SPENQ96T58 3664 aaKnown RBP13.05□□□□□ -0.32
PTCH1-226ENST00000553011 NME2P1O60361 137 aa13.04□□□□□ -0.32
PTCH1-226ENST00000553011 PLOD3O60568 738 aa13.04□□□□□ -0.32
PTCH1-226ENST00000553011 SP1P08047 785 aa13.04□□□□□ -0.32
PTCH1-226ENST00000553011 ALDOCP09972 364 aaKnown RBP13.04□□□□□ -0.32
PTCH1-226ENST00000553011 PRPS1L1P21108 318 aa13.04□□□□□ -0.32
PTCH1-226ENST00000553011 NME2P22392 152 aa13.04□□□□□ -0.32
PTCH1-226ENST00000553011 FRKP42685 505 aaPredicted RBP13.04□□□□□ -0.32
PTCH1-226ENST00000553011 CLDN8P56748 225 aa13.04□□□□□ -0.32
PTCH1-226ENST00000553011 PMP22Q01453 160 aa13.04□□□□□ -0.32
PTCH1-226ENST00000553011 SRSF11Q05519 484 aaKnown RBP13.04□□□□□ -0.32
PTCH1-226ENST00000553011 NNATQ16517 81 aa13.04□□□□□ -0.32
PTCH1-226ENST00000553011 MAPKAPK3Q16644 382 aa13.04□□□□□ -0.32
PTCH1-226ENST00000553011 HSP90B2PQ58FF3 399 aa13.04□□□□□ -0.32
PTCH1-226ENST00000553011 CPTPQ5TA50 214 aa13.04□□□□□ -0.32
PTCH1-226ENST00000553011 RPUSD3Q6P087 351 aaKnown RBP13.04□□□□□ -0.32
PTCH1-226ENST00000553011 OPN5Q6U736 354 aa13.04□□□□□ -0.32
PTCH1-226ENST00000553011 GALNTL5Q7Z4T8 443 aa13.04□□□□□ -0.32
PTCH1-226ENST00000553011 LRRC34Q8IZ02 419 aa13.04□□□□□ -0.32
PTCH1-226ENST00000553011 SLC22A8Q8TCC7 542 aa13.04□□□□□ -0.32
PTCH1-226ENST00000553011 ERP27Q96DN0 273 aa13.04□□□□□ -0.32
PTCH1-226ENST00000553011 MAGED4Q96JG8 741 aa13.04□□□□□ -0.32
PTCH1-226ENST00000553011 MAELQ96JY0 434 aaKnown RBP13.04□□□□□ -0.32
PTCH1-226ENST00000553011 OR52B2Q96RD2 323 aa13.04□□□□□ -0.32
PTCH1-226ENST00000553011 NXF5Q9H1B4 397 aaKnown RBP13.04□□□□□ -0.32
PTCH1-226ENST00000553011 CFL2Q9Y281 166 aa13.04□□□□□ -0.32
PTCH1-226ENST00000553011 COPG1Q9Y678 874 aaKnown RBP13.04□□□□□ -0.32
PTCH1-226ENST00000553011 ATP8B1O43520 1251 aa13.03□□□□□ -0.32
PTCH1-226ENST00000553011 GPC1P35052 558 aa13.03□□□□□ -0.32
PTCH1-226ENST00000553011 RPL3P39023 403 aaKnown RBP13.03□□□□□ -0.32
PTCH1-226ENST00000553011 CDK9P50750 372 aaKnown RBP13.03□□□□□ -0.32
PTCH1-226ENST00000553011 MANFP55145 182 aaKnown RBP13.03□□□□□ -0.32
PTCH1-226ENST00000553011 ZNF791Q3KP31 576 aaPredicted RBP13.03□□□□□ -0.32
PTCH1-226ENST00000553011 NXNQ6DKJ4 435 aa13.03□□□□□ -0.32
PTCH1-226ENST00000553011 GPALPP1Q8IXQ4 340 aa13.03□□□□□ -0.32
PTCH1-226ENST00000553011 PRR22Q8IZ63 422 aa13.03□□□□□ -0.32
PTCH1-226ENST00000553011 SLC15A4Q8N697 577 aa13.03□□□□□ -0.32
PTCH1-226ENST00000553011 TMEM178AQ8NBL3 297 aa13.03□□□□□ -0.32
PTCH1-226ENST00000553011 ZFP28Q8NHY6 868 aa13.03□□□□□ -0.32
PTCH1-226ENST00000553011 GRHL3Q8TE85 626 aa13.03□□□□□ -0.32
PTCH1-226ENST00000553011 TP53INP1Q96A56 240 aa13.03□□□□□ -0.32
PTCH1-226ENST00000553011 TMEM125Q96AQ2 219 aa13.03□□□□□ -0.32
PTCH1-226ENST00000553011 MIB2Q96AX9 1013 aa13.03□□□□□ -0.32
PTCH1-226ENST00000553011 SPACA9Q96E40 222 aaPredicted RBP13.03□□□□□ -0.32
PTCH1-226ENST00000553011 ELP4Q96EB1 424 aa13.03□□□□□ -0.32
PTCH1-226ENST00000553011 ZBED6CLQ96FA7 236 aaPredicted RBP13.03□□□□□ -0.32
PTCH1-226ENST00000553011 MARK4Q96L34 752 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms