RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 MPEG1Q2M385 716 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 CR1LQ2VPA4 569 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 NHSL2Q5HYW2 709 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 SFRP5Q5T4F7 317 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 LRRC38Q5VT99 294 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 AGTRAPQ6RW13 159 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 SASS6Q6UVJ0 657 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 SCIMPQ6UWF3 145 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 ENPP6Q6UWR7 440 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 ANGPTL8Q6UXH0 198 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 DNM1P46Q6ZS02 220 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 SDCCAG8Q86SQ7 713 aaPredicted RBP4.3□□□□□ -1.72
LIMS1-214ENST00000542845 LINC00523Q86TU6 105 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 CTAGE6Q86UF2 777 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 LRRC6Q86X45 466 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 CILP2Q8IUL8 1156 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 OR4N5Q8IXE1 308 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 C9orf40Q8IXQ3 194 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 PRR22Q8IZ63 422 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 MYO1HQ8N1T3 1032 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 ZNF619Q8N2I2 560 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 ZNF525Q8N782 197 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 FAM71DQ8N9W8 422 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 OR1J4Q8NGS1 313 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 OR8K3Q8NH51 312 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 NT5CQ8TCD5 201 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 ZNF721Q8TF20 911 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 FAM168AQ92567 244 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 PPWD1Q96BP3 646 aaKnown RBP4.3□□□□□ -1.72
LIMS1-214ENST00000542845 ADAD1Q96M93 576 aaKnown RBP4.3□□□□□ -1.72
LIMS1-214ENST00000542845 NAP1L5Q96NT1 182 aaPredicted RBP4.3□□□□□ -1.72
LIMS1-214ENST00000542845 BIRC8Q96P09 236 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 TACO1Q9BSH4 297 aaKnown RBP4.3□□□□□ -1.72
LIMS1-214ENST00000542845 PCBD2Q9H0N5 130 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 SPNS1Q9H2V7 528 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 GOLPH3Q9H4A6 298 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 ZNHIT6Q9NWK9 470 aaKnown RBP4.3□□□□□ -1.72
LIMS1-214ENST00000542845 MOCS1Q9NZB8 636 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 ZFP69BQ9UJL9 534 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 ZNF180Q9UJW8 692 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 PROCRQ9UNN8 238 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 B3GALT5Q9Y2C3 310 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 DTX4Q9Y2E6 619 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 C15orf41Q9Y2V0 281 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 RNF115Q9Y4L5 304 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 MALRD1Q5VYJ5 2156 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 PKD1L1Q8TDX9 2849 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 A0A096LNT2 108 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 IQANK1A0A1B0GTG1 560 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 FAM95CA0A1B0GW59 222 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 TRBC2A0A5B9 178 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 SLC22A20A6NK97 555 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 E7EVH7 732 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 HRKO00198 91 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 CDC7O00311 574 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 PFDN6O15212 129 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 ERI3O43414 337 aaKnown RBP4.29□□□□□ -1.72
LIMS1-214ENST00000542845 B3GALT2O43825 422 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 OR10H2O60403 315 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 CTNSO60931 367 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 SNX4O95219 450 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 VAPBO95292 243 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 GSNP06396 782 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 FESP07332 822 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 TMEM253P0C7T8 217 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 COX7A2P14406 83 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 IFNGR1P15260 489 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 SLC25A16P16260 332 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 USF1P22415 310 aaPredicted RBP4.29□□□□□ -1.72
LIMS1-214ENST00000542845 RPS3P23396 243 aaKnown RBP eCLIP4.29□□□□□ -1.72
LIMS1-214ENST00000542845 CHMP24386 653 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 PSMA3P25788 255 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 NMBRP28336 390 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 CASP3P42574 277 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 SLC1A1P43005 524 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 KIR2DL2P43627 348 aaPredicted RBP4.29□□□□□ -1.72
LIMS1-214ENST00000542845 MARCKSL1P49006 195 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 GZMKP49863 264 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 PLA2G16P53816 162 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 SESN2P58004 480 aaPredicted RBP4.29□□□□□ -1.72
LIMS1-214ENST00000542845 CRADDP78560 199 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 RAB35Q15286 201 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 NRF1Q16656 503 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 CTU2Q2VPK5 515 aaKnown RBP4.29□□□□□ -1.72
LIMS1-214ENST00000542845 PGGHGQ32M88 737 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 TTLL9Q3SXZ7 439 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 FNDC7Q5VTL7 733 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 OR2A2Q6IF42 318 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 LCTLQ6UWM7 567 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 CES3Q6UWW8 571 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 BBS12Q6ZW61 710 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 SLC29A4Q7RTT9 530 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 PIWIL4Q7Z3Z4 852 aaKnown RBP4.29□□□□□ -1.72
LIMS1-214ENST00000542845 MILR1Q7Z6M3 343 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 GPSM1Q86YR5 675 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 PALM2Q8IXS6 379 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 ZNF595Q8IYB9 648 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 SLC15A4Q8N697 577 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 ANKRD53Q8N9V6 530 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 TRPV3Q8NET8 790 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms