RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 A0A1W2PP18 115 aa15.91■□□□□ 0.14
LIG1-204ENST00000542460 UPK1AO00322 258 aa15.91■□□□□ 0.14
LIG1-204ENST00000542460 PRAMEF2O60811 474 aa15.91■□□□□ 0.14
LIG1-204ENST00000542460 DCTN3O75935 186 aa15.91■□□□□ 0.14
LIG1-204ENST00000542460 ZFAND5O76080 213 aa15.91■□□□□ 0.14
LIG1-204ENST00000542460 CPSF4O95639 269 aaKnown RBP15.91■□□□□ 0.14
LIG1-204ENST00000542460 SNRPB2P08579 225 aaKnown RBP15.91■□□□□ 0.14
LIG1-204ENST00000542460 CD1EP15812 388 aa15.91■□□□□ 0.14
LIG1-204ENST00000542460 CAPN3P20807 821 aa15.91■□□□□ 0.14
LIG1-204ENST00000542460 RNF4P78317 190 aa15.91■□□□□ 0.14
LIG1-204ENST00000542460 MAPRE2Q15555 327 aa15.91■□□□□ 0.14
LIG1-204ENST00000542460 TBR1Q16650 682 aa15.91■□□□□ 0.14
LIG1-204ENST00000542460 SIMC1Q8NDZ2 872 aa15.91■□□□□ 0.14
LIG1-204ENST00000542460 OR52R1Q8NGF1 315 aa15.91■□□□□ 0.14
LIG1-204ENST00000542460 OR5L2Q8NGL0 311 aa15.91■□□□□ 0.14
LIG1-204ENST00000542460 GOT1L1Q8NHS2 421 aaPredicted RBP15.91■□□□□ 0.14
LIG1-204ENST00000542460 ITCHQ96J02 903 aa15.91■□□□□ 0.14
LIG1-204ENST00000542460 MAGED4Q96JG8 741 aa15.91■□□□□ 0.14
LIG1-204ENST00000542460 PANX1Q96RD7 426 aa15.91■□□□□ 0.14
LIG1-204ENST00000542460 CCDC106Q9BWC9 280 aa15.91■□□□□ 0.14
LIG1-204ENST00000542460 CXorf36Q9H7Y0 433 aa15.91■□□□□ 0.14
LIG1-204ENST00000542460 ANKRA2Q9H9E1 313 aa15.91■□□□□ 0.14
LIG1-204ENST00000542460 NTMQ9P121 344 aa15.91■□□□□ 0.14
LIG1-204ENST00000542460 ERVK-11Q9UQG0 969 aa15.91■□□□□ 0.14
LIG1-204ENST00000542460 SNX8Q9Y5X2 465 aa15.91■□□□□ 0.14
LIG1-204ENST00000542460 A6NL46 340 aa15.9■□□□□ 0.14
LIG1-204ENST00000542460 EMC8O43402 210 aa15.9■□□□□ 0.14
LIG1-204ENST00000542460 COQ9O75208 318 aa15.9■□□□□ 0.14
LIG1-204ENST00000542460 DNAJB5O75953 348 aa15.9■□□□□ 0.14
LIG1-204ENST00000542460 CCT3P49368 545 aaKnown RBP15.9■□□□□ 0.14
LIG1-204ENST00000542460 CBX1P83916 185 aa15.9■□□□□ 0.14
LIG1-204ENST00000542460 PRR5P85299 388 aa15.9■□□□□ 0.14
LIG1-204ENST00000542460 H3F3CQ6NXT2 135 aa15.9■□□□□ 0.14
LIG1-204ENST00000542460 TMEM64Q6YI46 380 aa15.9■□□□□ 0.14
LIG1-204ENST00000542460 SLC29A4Q7RTT9 530 aa15.9■□□□□ 0.14
LIG1-204ENST00000542460 SLC5A8Q8N695 610 aa15.9■□□□□ 0.14
LIG1-204ENST00000542460 C16orf52Q8NHV5 167 aa15.9■□□□□ 0.14
LIG1-204ENST00000542460 BRIX1Q8TDN6 353 aaKnown RBP15.9■□□□□ 0.14
LIG1-204ENST00000542460 PSMF1Q92530 271 aa15.9■□□□□ 0.14
LIG1-204ENST00000542460 MOAP1Q96BY2 351 aa15.9■□□□□ 0.14
LIG1-204ENST00000542460 FAM120BQ96EK7 910 aaKnown RBP15.9■□□□□ 0.14
LIG1-204ENST00000542460 CRELD1Q96HD1 420 aa15.9■□□□□ 0.14
LIG1-204ENST00000542460 LRRC37BQ96QE4 947 aa15.9■□□□□ 0.14
LIG1-204ENST00000542460 SLC25A23Q9BV35 468 aa15.9■□□□□ 0.14
LIG1-204ENST00000542460 SERHLQ9NQF3 203 aa15.9■□□□□ 0.14
LIG1-204ENST00000542460 PRODH2Q9UF12 536 aa15.9■□□□□ 0.14
LIG1-204ENST00000542460 NDUFAF1Q9Y375 327 aa15.9■□□□□ 0.14
LIG1-204ENST00000542460 CROCCQ5TZA2 2017 aa15.9■□□□□ 0.14
LIG1-204ENST00000542460 LOC400499M0QZD8 3231 aa15.9■□□□□ 0.14
LIG1-204ENST00000542460 A8MUI8 341 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 RFXANKO14593 260 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 ANGPT2O15123 496 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 CEACAM4O75871 244 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 TRPC1P48995 793 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 EMDP50402 254 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 DUSP8Q13202 625 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 MYBPC3Q14896 1274 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 TLR1Q15399 786 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 SPDYE7PQ495Y7 208 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 BHLHB9Q6PI77 547 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 SLC2A7Q6PXP3 512 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 C9orf40Q8IXQ3 194 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 TRIML2Q8N7C3 387 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 NUP43Q8NFH3 380 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 NUBPLQ8TB37 319 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 SFXN5Q8TD22 340 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 GTF2H4Q92759 462 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 EXTL1Q92935 676 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 INPP5KQ9BT40 448 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 TRIM4Q9C037 500 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 ZCCHC3Q9NUD5 404 aaKnown RBP15.89■□□□□ 0.13
LIG1-204ENST00000542460 TEKT2Q9UIF3 430 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 LEF1Q9UJU2 399 aaPredicted RBP15.89■□□□□ 0.13
LIG1-204ENST00000542460 VPS4AQ9UN37 437 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 PTPRQQ9UMZ3 2332 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 LOC100653049A0A140TA62 436 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 C2orf92A0A1B0GVN3 265 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 ASPDHA6ND91 283 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 PRKNO60260 465 aaPredicted RBP15.89■□□□□ 0.13
LIG1-204ENST00000542460 KRT34O76011 436 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 PSMG1O95456 288 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 UQCRC2P22695 453 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 SOAT1P35610 550 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 PRKAG1P54619 331 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 CYLC2Q14093 348 aaPredicted RBP15.89■□□□□ 0.13
LIG1-204ENST00000542460 EBPQ15125 230 aaKnown RBP15.89■□□□□ 0.13
LIG1-204ENST00000542460 C6orf10Q5SRN2 563 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 AGAP7PQ5VUJ5 663 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 HLA-DQA1Q5Y7H0 255 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 ZNF621Q6ZSS3 439 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 SZRD1Q7Z422 152 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 RPS19BP1Q86WX3 136 aaKnown RBP15.89■□□□□ 0.13
LIG1-204ENST00000542460 ARMC10Q8N2F6 343 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 SIRT6Q8N6T7 355 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 OR56A1Q8NGH5 318 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 RP9Q8TA86 221 aaKnown RBP15.89■□□□□ 0.13
LIG1-204ENST00000542460 AGAP4Q96P64 663 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 WWTR1Q9GZV5 400 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 GPR83Q9NYM4 423 aa15.89■□□□□ 0.13
LIG1-204ENST00000542460 HEMK1Q9Y5R4 338 aaPredicted RBP15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms