RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	STEAP4	Q687X5	459 aa		11.33	□□□□□ -0.6
CAPN1-223	ENST00000533079	TMEM81	Q6P7N7	255 aa		11.33	□□□□□ -0.6
CAPN1-223	ENST00000533079	ENPP6	Q6UWR7	440 aa		11.33	□□□□□ -0.6
CAPN1-223	ENST00000533079	ZNF793	Q6ZN11	406 aa		11.33	□□□□□ -0.6
CAPN1-223	ENST00000533079	IGDCC3	Q8IVU1	814 aa		11.33	□□□□□ -0.6
CAPN1-223	ENST00000533079	TCAIM	Q8N3R3	496 aa		11.33	□□□□□ -0.6
CAPN1-223	ENST00000533079	MEIOB	Q8N635	442 aa		11.33	□□□□□ -0.6
CAPN1-223	ENST00000533079	ACOT4	Q8N9L9	421 aa		11.33	□□□□□ -0.6
CAPN1-223	ENST00000533079	SPPL2A	Q8TCT8	520 aa		11.33	□□□□□ -0.6
CAPN1-223	ENST00000533079	TP53INP1	Q96A56	240 aa		11.33	□□□□□ -0.6
CAPN1-223	ENST00000533079	DTNBP1	Q96EV8	351 aa		11.33	□□□□□ -0.6
CAPN1-223	ENST00000533079	WDR34	Q96EX3	536 aa		11.33	□□□□□ -0.6
CAPN1-223	ENST00000533079	PTCD3	Q96EY7	689 aa	Known RBP	11.33	□□□□□ -0.6
CAPN1-223	ENST00000533079	CERS2	Q96G23	380 aa		11.33	□□□□□ -0.6
CAPN1-223	ENST00000533079	VPS39	Q96JC1	886 aa		11.33	□□□□□ -0.6
CAPN1-223	ENST00000533079	MAPKAP1	Q9BPZ7	522 aa		11.33	□□□□□ -0.6
CAPN1-223	ENST00000533079	RPF2	Q9H7B2	306 aa	Known RBP	11.33	□□□□□ -0.6
CAPN1-223	ENST00000533079	C6orf203	Q9P0P8	240 aa	Predicted RBP	11.33	□□□□□ -0.6
CAPN1-223	ENST00000533079	SLC6A5	Q9Y345	797 aa		11.33	□□□□□ -0.6
CAPN1-223	ENST00000533079	KIAA1549	Q9HCM3	1950 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	EXOC1L	A0A1B0GW35	172 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	NPEPPSL1	A6NEC2	478 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079		H0Y3Z8	333 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	CDC7	O00311	574 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	SIAH2	O43255	324 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	LRAT	O95237	230 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	CRH	P06850	196 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	GCA	P28676	217 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	SERPINB1	P30740	379 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	NRG3	P56975	720 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	HERVK_113	P63132	956 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	ERVK-8	P63133	956 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	ID2	Q02363	134 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	FNDC7	Q5VTL7	733 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	HEPHL1	Q6MZM0	1159 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	EPS8L3	Q8TE67	593 aa	Known RBP	11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	TANK	Q92844	425 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	RHBDF1	Q96CC6	855 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	PIK3IP1	Q96FE7	263 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	GNRHR2	Q96P88	292 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	F2RL3	Q96RI0	385 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	TUBA1C	Q9BQE3	449 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	ERVK-6	Q9BXR3	956 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	MS4A8	Q9BY19	250 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	CENPH	Q9H3R5	247 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	CXorf56	Q9H5V9	222 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	SSU72	Q9NP77	194 aa	Known RBP	11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	MOCS1	Q9NZB8	636 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	CLCF1	Q9UBD9	225 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	PHF11	Q9UIL8	331 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	ZNF180	Q9UJW8	692 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	IKZF3	Q9UKT9	509 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	ERVK-19	Q9WJR5	959 aa		11.32	□□□□□ -0.6
CAPN1-223	ENST00000533079	CHD3	Q12873	2000 aa	Known RBP	11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	C2orf92	A0A1B0GVN3	265 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	TCRBV9S1A1T	A0A576	114 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	HRK	O00198	91 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	F12	P00748	615 aa	Predicted RBP	11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	PTPN6	P29350	595 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	SSTR1	P30872	391 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	TLX1	P31314	330 aa	Predicted RBP	11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	GGT5	P36269	586 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	MDH1	P40925	334 aa	Known RBP	11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	BUD31	P41223	144 aa	Predicted RBP	11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	CASP3	P42574	277 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	SSR2	P43308	183 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	SLCO1A2	P46721	670 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	NAGLU	P54802	743 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	GYS2	P54840	703 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	TNFRSF17	Q02223	184 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	KRTAP1-1	Q07627	177 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	PCDH1	Q08174	1060 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	NAB1	Q13506	487 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	HIST2H2AC	Q16777	129 aa	Predicted RBP	11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	AP5B1	Q2VPB7	878 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	EIPR1	Q53HC9	387 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	WIPI1	Q5MNZ9	446 aa	Predicted RBP	11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	TIGD3	Q6B0B8	471 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	HIST2H2AA3	Q6FI13	130 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	HMBOX1	Q6NT76	420 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	EXOC3L1	Q86VI1	746 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	ANKMY2	Q8IV38	441 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	FAM83F	Q8NEG4	500 aa	Predicted RBP	11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	C17orf47	Q8NEP4	570 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	OR1J4	Q8NGS1	313 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	UHMK1	Q8TAS1	419 aa	Known RBP	11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	FBF1	Q8TES7	1133 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	SLC44A1	Q8WWI5	657 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	IGFBPL1	Q8WX77	278 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	UBE2E3	Q969T4	207 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	INTS12	Q96CB8	462 aa	Known RBP	11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	MED18	Q9BUE0	208 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	ZNF701	Q9NV72	531 aa	Predicted RBP	11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	DNAJC11	Q9NVH1	559 aa		11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	TEX10	Q9NXF1	929 aa	Predicted RBP	11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	PTBP2	Q9UKA9	531 aa	Known RBP	11.31	□□□□□ -0.6
CAPN1-223	ENST00000533079	DOCK7	Q96N67	2140 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	TNFSF12-TNFSF13	A0A0A6YY99	330 aa		11.3	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms