RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 KRT15P19012 456 aa15.4■□□□□ 0.06
CPSF1-207ENST00000531727 TSPAN8P19075 237 aa15.4■□□□□ 0.06
CPSF1-207ENST00000531727 ABCD3P28288 659 aa15.4■□□□□ 0.06
CPSF1-207ENST00000531727 DEKP35659 375 aaKnown RBP15.4■□□□□ 0.06
CPSF1-207ENST00000531727 MASP1P48740 699 aa15.4■□□□□ 0.06
CPSF1-207ENST00000531727 CDK9P50750 372 aaKnown RBP15.4■□□□□ 0.06
CPSF1-207ENST00000531727 MGAT2Q10469 447 aa15.4■□□□□ 0.06
CPSF1-207ENST00000531727 ACSF3Q4G176 576 aaPredicted RBP15.4■□□□□ 0.06
CPSF1-207ENST00000531727 FAM111BQ6SJ93 734 aa15.4■□□□□ 0.06
CPSF1-207ENST00000531727 TMEM200AQ86VY9 491 aa15.4■□□□□ 0.06
CPSF1-207ENST00000531727 PM20D2Q8IYS1 436 aa15.4■□□□□ 0.06
CPSF1-207ENST00000531727 MMP21Q8N119 569 aa15.4■□□□□ 0.06
CPSF1-207ENST00000531727 UHMK1Q8TAS1 419 aaKnown RBP15.4■□□□□ 0.06
CPSF1-207ENST00000531727 TM4SF18Q96CE8 201 aa15.4■□□□□ 0.06
CPSF1-207ENST00000531727 NTNG2Q96CW9 530 aa15.4■□□□□ 0.06
CPSF1-207ENST00000531727 TMEM41AQ96HV5 264 aa15.4■□□□□ 0.06
CPSF1-207ENST00000531727 TIMP4Q99727 224 aa15.4■□□□□ 0.06
CPSF1-207ENST00000531727 BRINP2Q9C0B6 783 aa15.4■□□□□ 0.06
CPSF1-207ENST00000531727 NMRK1Q9NWW6 199 aa15.4■□□□□ 0.06
CPSF1-207ENST00000531727 MAT2BQ9NZL9 334 aa15.4■□□□□ 0.06
CPSF1-207ENST00000531727 ZNF639Q9UID6 485 aa15.4■□□□□ 0.06
CPSF1-207ENST00000531727 ZNF225Q9UK10 706 aa15.4■□□□□ 0.06
CPSF1-207ENST00000531727 PSME2Q9UL46 239 aa15.4■□□□□ 0.06
CPSF1-207ENST00000531727 CFL2Q9Y281 166 aa15.4■□□□□ 0.06
CPSF1-207ENST00000531727 DTX4Q9Y2E6 619 aa15.4■□□□□ 0.06
CPSF1-207ENST00000531727 TEP1Q99973 2627 aaKnown RBP15.39■□□□□ 0.05
CPSF1-207ENST00000531727 CDH16O75309 829 aa15.39■□□□□ 0.05
CPSF1-207ENST00000531727 ERAL1O75616 437 aaKnown RBP15.39■□□□□ 0.05
CPSF1-207ENST00000531727 PPM1BO75688 479 aa15.39■□□□□ 0.05
CPSF1-207ENST00000531727 ZWINTO95229 277 aa15.39■□□□□ 0.05
CPSF1-207ENST00000531727 EPPINO95925 133 aa15.39■□□□□ 0.05
CPSF1-207ENST00000531727 CSNK2A2P19784 350 aaPredicted RBP15.39■□□□□ 0.05
CPSF1-207ENST00000531727 HSD17B3P37058 310 aa15.39■□□□□ 0.05
CPSF1-207ENST00000531727 FEN1P39748 380 aaKnown RBP15.39■□□□□ 0.05
CPSF1-207ENST00000531727 TRA2BP62995 288 aaKnown RBP15.39■□□□□ 0.05
CPSF1-207ENST00000531727 NNATQ16517 81 aa15.39■□□□□ 0.05
CPSF1-207ENST00000531727 GLE1Q53GS7 698 aaKnown RBP15.39■□□□□ 0.05
CPSF1-207ENST00000531727 ARSKQ6UWY0 536 aa15.39■□□□□ 0.05
CPSF1-207ENST00000531727 C1orf52Q8N6N3 182 aaKnown RBP15.39■□□□□ 0.05
CPSF1-207ENST00000531727 RELL2Q8NC24 303 aaPredicted RBP15.39■□□□□ 0.05
CPSF1-207ENST00000531727 MNS1Q8NEH6 495 aa15.39■□□□□ 0.05
CPSF1-207ENST00000531727 KLHL29Q96CT2 875 aa15.39■□□□□ 0.05
CPSF1-207ENST00000531727 GNRHR2Q96P88 292 aa15.39■□□□□ 0.05
CPSF1-207ENST00000531727 PRDM14Q9GZV8 571 aa15.39■□□□□ 0.05
CPSF1-207ENST00000531727 BCAP29Q9UHQ4 241 aa15.39■□□□□ 0.05
CPSF1-207ENST00000531727 FREM3P0C091 2139 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 EXOC1LA0A1B0GW35 172 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 OR4F21O95013 312 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 CEACAM8P31997 349 aaPredicted RBP15.38■□□□□ 0.05
CPSF1-207ENST00000531727 TIMP3P35625 211 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 SOX18P35713 384 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 RIPPLY3P57055 190 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 CLCQ05315 142 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 EXOSC7Q15024 291 aaKnown RBP15.38■□□□□ 0.05
CPSF1-207ENST00000531727 TOMM20Q15388 145 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 NHSL2Q5HYW2 709 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 TEX35Q5T0J7 233 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 LGSNQ5TDP6 509 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 FAM219BQ5XKK7 198 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 TIGD3Q6B0B8 471 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 VASNQ6EMK4 673 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 TMEM81Q6P7N7 255 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 LACC1Q8IV20 430 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 NAXEQ8NCW5 288 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 ADCY4Q8NFM4 1077 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 TNIP2Q8NFZ5 429 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 ZNF592Q92610 1267 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 CTHRC1Q96CG8 243 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 OMA1Q96E52 524 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 HSPBAP1Q96EW2 488 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 LCORQ96JN0 433 aaPredicted RBP15.38■□□□□ 0.05
CPSF1-207ENST00000531727 ZNF681Q96N22 645 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 HBEGFQ99075 208 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 FAIM2Q9BWQ8 316 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 ITPAQ9BY32 194 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 METTL7AQ9H8H3 244 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 VPS29Q9UBQ0 182 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 SLC6A5Q9Y345 797 aa15.38■□□□□ 0.05
CPSF1-207ENST00000531727 HIVEP1P15822 2718 aa15.37■□□□□ 0.05
CPSF1-207ENST00000531727 KDM4EB2RXH2 506 aaPredicted RBP15.37■□□□□ 0.05
CPSF1-207ENST00000531727 SYT5O00445 386 aa15.37■□□□□ 0.05
CPSF1-207ENST00000531727 MANBAO00462 879 aa15.37■□□□□ 0.05
CPSF1-207ENST00000531727 DVL2O14641 736 aa15.37■□□□□ 0.05
CPSF1-207ENST00000531727 ACOX3O15254 700 aa15.37■□□□□ 0.05
CPSF1-207ENST00000531727 CBX7O95931 251 aa15.37■□□□□ 0.05
CPSF1-207ENST00000531727 KRT6AP02538 564 aa15.37■□□□□ 0.05
CPSF1-207ENST00000531727 KRT6BP04259 564 aa15.37■□□□□ 0.05
CPSF1-207ENST00000531727 CTAGE8P0CG41 777 aa15.37■□□□□ 0.05
CPSF1-207ENST00000531727 HSD3B1P14060 373 aa15.37■□□□□ 0.05
CPSF1-207ENST00000531727 TAC1P20366 129 aa15.37■□□□□ 0.05
CPSF1-207ENST00000531727 BMP5P22003 454 aa15.37■□□□□ 0.05
CPSF1-207ENST00000531727 HSD3B2P26439 372 aa15.37■□□□□ 0.05
CPSF1-207ENST00000531727 PTPN6P29350 595 aa15.37■□□□□ 0.05
CPSF1-207ENST00000531727 PEX19P40855 299 aa15.37■□□□□ 0.05
CPSF1-207ENST00000531727 KRT6CP48668 564 aa15.37■□□□□ 0.05
CPSF1-207ENST00000531727 ALDH9A1P49189 494 aa15.37■□□□□ 0.05
CPSF1-207ENST00000531727 ASCL1P50553 236 aa15.37■□□□□ 0.05
CPSF1-207ENST00000531727 WNT3P56703 355 aa15.37■□□□□ 0.05
CPSF1-207ENST00000531727 DUSP2Q05923 314 aa15.37■□□□□ 0.05
CPSF1-207ENST00000531727 PLCXD2Q0VAA5 305 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms