RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 PITX1P78337 314 aaPredicted RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CSNK1G2P78368 415 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 BASP1P80723 227 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 SARNPP82979 210 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 MAT1AQ00266 395 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 PSG6Q00889 435 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 IL9RQ01113 521 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 OTUD4Q01804 1114 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 OGDHQ02218 1023 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 TFF2Q03403 129 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 LIPEQ05469 1076 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 FOXM1Q08050 763 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 TGM3Q08188 693 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CRYZQ08257 329 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 RASGEF1BQ0VAM2 473 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 PJVKQ0ZLH3 352 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 BST2Q10589 180 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 TRAP1Q12931 704 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 PLA2G7Q13093 441 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 GPS2Q13227 327 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF177Q13360 481 aaPredicted RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 MSLNQ13421 630 aaPredicted RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 XRCC4Q13426 336 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 PKP1Q13835 747 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 DGCR6Q14129 220 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CRMP1Q14194 572 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 BTG3Q14201 252 aaPredicted RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 GRB14Q14449 540 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ELAVL3Q14576 367 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 RFTN1Q14699 578 aaPredicted RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 MEF2DQ14814 521 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 KPNB1Q14974 876 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 HERC3Q15034 1050 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 NONOQ15233 471 aaKnown RBP eCLIP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 SPHARQ15513 63 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 VAMP3Q15836 100 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 RAB11BQ15907 218 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 SYPL1Q16563 259 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 PHKG1Q16816 387 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ODF4Q2M2E3 257 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 RGS21Q2M5E4 152 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM44Q2T9K0 475 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF829Q3KNS6 432 aaPredicted RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 UGT3A2Q3SY77 523 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 AMZ1Q400G9 498 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF672Q499Z4 452 aaPredicted RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ACSF3Q4G176 576 aaPredicted RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZC2HC1CQ53FD0 456 aaPredicted RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 HIKESHIQ53FT3 197 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 AGKQ53H12 422 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 LBHQ53QV2 105 aaPredicted RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 TEX44Q53QW1 395 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 SYT14P1Q58G82 188 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CT45A2Q5DJT8 189 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 RNASE12Q5GAN4 147 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 XKR7Q5GH72 579 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC25A53Q5H9E4 307 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ENTPD8Q5MY95 495 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 EOGTQ5NDL2 527 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 RABGAP1LQ5R372 815 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 PDSS1Q5T2R2 415 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 LGSNQ5TDP6 509 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 C1orf189Q5VU69 101 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM46CQ5VWP2 391 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 MLIPQ5VWP3 458 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 SUSD4Q5VX71 490 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ALS2CLQ60I27 953 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 SPECC1LQ69YQ0 1117 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 STUMQ69YW2 141 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 PTRHD1Q6GMV3 140 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR4F3Q6IEY1 312 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF770Q6IQ21 691 aaPredicted RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC25A25Q6KCM7 469 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CAPN13Q6MZZ7 669 aaPredicted RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZSCAN25Q6NSZ9 544 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 RHBDD2Q6NTF9 364 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 UGT3A1Q6NUS8 523 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 RGMBQ6NW40 437 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM71F2Q6NXP2 309 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ANKRD54Q6NXT1 300 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 C8orf82Q6P1X6 216 aaPredicted RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM53Q6P2H8 277 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 RNASEKQ6P5S7 137 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC39A4Q6P5W5 647 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 TTC23LQ6PF05 361 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 KCTD18Q6PI47 426 aaPredicted RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 RHBDF2Q6PJF5 856 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 DOK6Q6PKX4 331 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRSS55Q6UWB4 352 aaPredicted RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM107Q6UX40 140 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 PLXDC2Q6UX71 529 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 VITQ6UXI7 678 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 SIGLEC15Q6ZMC9 328 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 KDM7AQ6ZMT4 941 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 GCNT7Q6ZNI0 430 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 RBM44Q6ZP01 1051 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 DPY19L3Q6ZPD9 716 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 Q6ZTK2 550 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 TPGS1Q6ZTW0 290 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMPRSS11FQ6ZWK6 438 aa0.53□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms