RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 IMMP1LQ96LU5 166 aa9.34□□□□□ -0.91
NUP54-203ENST00000504173 BHLHE41Q9C0J9 482 aaPredicted RBP9.34□□□□□ -0.91
NUP54-203ENST00000504173 OR8D2Q9GZM6 311 aa9.34□□□□□ -0.91
NUP54-203ENST00000504173 ING2Q9H160 280 aa9.34□□□□□ -0.91
NUP54-203ENST00000504173 GLIPR2Q9H4G4 154 aa9.34□□□□□ -0.91
NUP54-203ENST00000504173 CXorf21Q9HAI6 301 aa9.34□□□□□ -0.91
NUP54-203ENST00000504173 COPS7AQ9UBW8 275 aa9.34□□□□□ -0.91
NUP54-203ENST00000504173 VPS4AQ9UN37 437 aa9.34□□□□□ -0.91
NUP54-203ENST00000504173 ERVK-19Q9WJR5 959 aa9.34□□□□□ -0.91
NUP54-203ENST00000504173 COPG1Q9Y678 874 aaKnown RBP9.34□□□□□ -0.91
NUP54-203ENST00000504173 A6NL46 340 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 SNX3O60493 162 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 SHOX2O60902 331 aaPredicted RBP9.33□□□□□ -0.92
NUP54-203ENST00000504173 SERPINA7P05543 415 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 GPX3P22352 226 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 IL12AP29459 219 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 GPC1P35052 558 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 MRPL19P49406 292 aaKnown RBP9.33□□□□□ -0.92
NUP54-203ENST00000504173 MANFP55145 182 aaKnown RBP9.33□□□□□ -0.92
NUP54-203ENST00000504173 Q0VFX4 171 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 HSPB3Q12988 150 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 PRICKLE4Q2TBC4 344 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 FAM174BQ3ZCQ3 159 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 SPANXN4Q5MJ08 99 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 OR4F3Q6IEY1 312 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 FAM111BQ6SJ93 734 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 ZNF551Q7Z340 670 aaPredicted RBP9.33□□□□□ -0.92
NUP54-203ENST00000504173 APLFQ8IW19 511 aaPredicted RBP9.33□□□□□ -0.92
NUP54-203ENST00000504173 VWA5B2Q8N398 1253 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 GALNT16Q8N428 558 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 KIF2BQ8N4N8 673 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 NFAM1Q8NET5 270 aaPredicted RBP9.33□□□□□ -0.92
NUP54-203ENST00000504173 OR8J2Q8NGG1 315 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 OR9I1Q8NGQ6 314 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 OR1N1Q8NGS0 311 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 SUN3Q8TAQ9 357 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 M1APQ8TC57 530 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 ZNF675Q8TD23 568 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 APOBEC4Q8WW27 367 aaKnown RBP9.33□□□□□ -0.92
NUP54-203ENST00000504173 NCLNQ969V3 563 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 SENP5Q96HI0 755 aaPredicted RBP9.33□□□□□ -0.92
NUP54-203ENST00000504173 FBXL20Q96IG2 436 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 THOC3Q96J01 351 aaKnown RBP9.33□□□□□ -0.92
NUP54-203ENST00000504173 AMDHD1Q96NU7 426 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 MMP25Q9NPA2 562 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 SLAMF7Q9NQ25 335 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 ACSS1Q9NUB1 689 aaPredicted RBP9.33□□□□□ -0.92
NUP54-203ENST00000504173 MAT2BQ9NZL9 334 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 KCNMB2Q9Y691 235 aa9.33□□□□□ -0.92
NUP54-203ENST00000504173 SVILO95425 2214 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 TRBV11-1A0A0K0K1C0 115 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 A0A1W2PRB8 838 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 FAM234BA2RU67 622 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 HRKO00198 91 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 RNASET2O00584 256 aaKnown RBP9.32□□□□□ -0.92
NUP54-203ENST00000504173 CFLARO15519 480 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 DNAJB5O75953 348 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 SLITRK5O94991 958 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 C6orf47O95873 294 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 PGRP06401 933 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 CT62P0C5K7 136 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 ITGAMP11215 1152 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 PRF1P14222 555 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 SSTR4P31391 388 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 MC3RP41968 323 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 FRKP42685 505 aaPredicted RBP9.32□□□□□ -0.92
NUP54-203ENST00000504173 CCL11P51671 97 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 CLCN2P51788 898 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 POLR2JP52435 117 aaKnown RBP9.32□□□□□ -0.92
NUP54-203ENST00000504173 DGKQP52824 942 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 KCNK10P57789 538 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 MRPS35P82673 323 aaKnown RBP9.32□□□□□ -0.92
NUP54-203ENST00000504173 MGAT2Q10469 447 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 MAP4K2Q12851 820 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 MLC1Q15049 377 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 AGKQ53H12 422 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 ZNF628Q5EBL2 1059 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 ANXA8L1Q5VT79 327 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 TMEM107Q6UX40 140 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 RNF111Q6ZNA4 994 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 MTERF4Q7Z6M4 381 aaKnown RBP9.32□□□□□ -0.92
NUP54-203ENST00000504173 AMER2Q8N7J2 671 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 ZNF321PQ8N8H1 164 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 APCDD1LQ8NCL9 501 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 VPS37AQ8NEZ2 397 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 BRIX1Q8TDN6 353 aaKnown RBP9.32□□□□□ -0.92
NUP54-203ENST00000504173 ZNF721Q8TF20 911 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 OR5P2Q8WZ92 322 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 KAT2AQ92830 837 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 MAGED4Q96JG8 741 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 OR52E6Q96RD3 313 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 CCT8L2Q96SF2 557 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 NUDT9Q9BW91 350 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 LHPPQ9H008 270 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 ZNF385DQ9H6B1 395 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 ZNF71Q9NQZ8 489 aaPredicted RBP9.32□□□□□ -0.92
NUP54-203ENST00000504173 MRGBPQ9NV56 204 aa9.32□□□□□ -0.92
NUP54-203ENST00000504173 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.32□□□□□ -0.92
NUP54-203ENST00000504173 FAM120CQ9NX05 1096 aaKnown RBP9.32□□□□□ -0.92
NUP54-203ENST00000504173 CCDC167Q9P0B6 97 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms