RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 TRMOQ9BU70 441 aa3.97□□□□□ -1.77
BRCA1-220ENST00000492859 WRAP53Q9BUR4 548 aaKnown RBP3.97□□□□□ -1.77
BRCA1-220ENST00000492859 TMEM109Q9BVC6 243 aa3.97□□□□□ -1.77
BRCA1-220ENST00000492859 YTHDF1Q9BYJ9 559 aaKnown RBP3.97□□□□□ -1.77
BRCA1-220ENST00000492859 TPSD1Q9BZJ3 242 aa3.97□□□□□ -1.77
BRCA1-220ENST00000492859 TRIM9Q9C026 710 aa3.97□□□□□ -1.77
BRCA1-220ENST00000492859 OR51M1Q9H341 326 aa3.97□□□□□ -1.77
BRCA1-220ENST00000492859 C1orf198Q9H425 327 aa3.97□□□□□ -1.77
BRCA1-220ENST00000492859 GPN2Q9H9Y4 310 aaPredicted RBP3.97□□□□□ -1.77
BRCA1-220ENST00000492859 RRAGCQ9HB90 399 aa3.97□□□□□ -1.77
BRCA1-220ENST00000492859 PLGRKTQ9HBL7 147 aa3.97□□□□□ -1.77
BRCA1-220ENST00000492859 IL1RAPQ9NPH3 570 aa3.97□□□□□ -1.77
BRCA1-220ENST00000492859 DDX19AQ9NUU7 478 aaKnown RBP3.97□□□□□ -1.77
BRCA1-220ENST00000492859 SPHK1Q9NYA1 384 aa3.97□□□□□ -1.77
BRCA1-220ENST00000492859 IL17BQ9UHF5 180 aa3.97□□□□□ -1.77
BRCA1-220ENST00000492859 RWDD2AQ9UIY3 292 aa3.97□□□□□ -1.77
BRCA1-220ENST00000492859 PITPNC1Q9UKF7 332 aa3.97□□□□□ -1.77
BRCA1-220ENST00000492859 MGAT4AQ9UM21 535 aa3.97□□□□□ -1.77
BRCA1-220ENST00000492859 PSG11Q9UQ72 335 aa3.97□□□□□ -1.77
BRCA1-220ENST00000492859 EXO1Q9UQ84 846 aaKnown RBP3.97□□□□□ -1.77
BRCA1-220ENST00000492859 CSDC2Q9Y534 153 aaKnown RBP3.97□□□□□ -1.77
BRCA1-220ENST00000492859 PCDHB7Q9Y5E2 793 aa3.97□□□□□ -1.77
BRCA1-220ENST00000492859 EMSYQ7Z589 1322 aa3.96□□□□□ -1.77
BRCA1-220ENST00000492859 SOGA1O94964 1423 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 ELOA3CA0A087WX78 387 aaPredicted RBP3.96□□□□□ -1.78
BRCA1-220ENST00000492859 TRBV7-9A0A0J9YWB2 115 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 TEX13DA0A0J9YY54 714 aaPredicted RBP3.96□□□□□ -1.78
BRCA1-220ENST00000492859 PRSS37A4D1T9 235 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 ELOA3DA6NLF2 546 aaPredicted RBP3.96□□□□□ -1.78
BRCA1-220ENST00000492859 KLRF2D3W0D1 207 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 TRIM24O15164 1050 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 CYP26A1O43174 497 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 TIMM8AO60220 97 aaPredicted RBP3.96□□□□□ -1.78
BRCA1-220ENST00000492859 PRKRAO75569 313 aaKnown RBP3.96□□□□□ -1.78
BRCA1-220ENST00000492859 RAD51DO75771 328 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 FADS2O95864 444 aaKnown RBP3.96□□□□□ -1.78
BRCA1-220ENST00000492859 TXNDC12O95881 172 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 TGFB1P01137 390 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 IFNA5P01569 189 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 EPOP01588 193 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 TCRBP04435 133 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 PCCAP05165 728 aaPredicted RBP3.96□□□□□ -1.78
BRCA1-220ENST00000492859 SERPIND1P05546 499 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 CHRNGP07510 517 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 EPXP11678 715 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 IL2RBP14784 551 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 NTSR1P30989 418 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 THBS4P35443 961 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 COILP38432 576 aaPredicted RBP3.96□□□□□ -1.78
BRCA1-220ENST00000492859 EIF2B2P49770 351 aaKnown RBP3.96□□□□□ -1.78
BRCA1-220ENST00000492859 BLKP51451 505 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 CLCN3P51790 818 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 PRKXP51817 358 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 ESRRGP62508 458 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 CCL7P80098 99 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 RBBP4Q09028 425 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 SREBF2Q12772 1141 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 HYAL1Q12794 435 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 MTM1Q13496 603 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 FHL3Q13643 280 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 GK2Q14410 553 aaPredicted RBP3.96□□□□□ -1.78
BRCA1-220ENST00000492859 KRT81Q14533 505 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 CARTPTQ16568 116 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 RBBP7Q16576 425 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 ZNF699Q32M78 642 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 ITPRIPL2Q3MIP1 535 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 RPL13AP3Q6NVV1 102 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 TMEM107Q6UX40 140 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 LINC00114Q6XXX2 140 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 DCP2Q8IU60 420 aaKnown RBP3.96□□□□□ -1.78
BRCA1-220ENST00000492859 CCDC71Q8IV32 467 aaPredicted RBP3.96□□□□□ -1.78
BRCA1-220ENST00000492859 C4orf19Q8IY42 314 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 GSPT2Q8IYD1 628 aaKnown RBP3.96□□□□□ -1.78
BRCA1-220ENST00000492859 METTL4Q8N3J2 472 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 LCORLQ8N3X6 602 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 MREGQ8N565 214 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 LMNTD1Q8N9Z9 388 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 OR9G4Q8NGQ1 327 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 OR13C5Q8NGS8 318 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 OR9A2Q8NGT5 310 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 M1APQ8TC57 530 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 PHOSPHO1Q8TCT1 267 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 BLOC1S5Q8TDH9 187 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 GDPD5Q8WTR4 605 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 SUSD6Q92537 303 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 CNOT9Q92600 299 aaKnown RBP3.96□□□□□ -1.78
BRCA1-220ENST00000492859 BIRC7Q96CA5 298 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 R3HDM4Q96D70 268 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 PABPC5Q96DU9 382 aaKnown RBP3.96□□□□□ -1.78
BRCA1-220ENST00000492859 TMEM80Q96HE8 168 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 FAR2Q96K12 515 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 MARK4Q96L34 752 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 ZNF597Q96LX8 424 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 ZNF570Q96NI8 536 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 TRMT61BQ9BVS5 477 aaKnown RBP3.96□□□□□ -1.78
BRCA1-220ENST00000492859 SLC46A2Q9BY10 475 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 ADAMTS10Q9H324 1103 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 ACTL8Q9H568 366 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 PPP1R3EQ9H7J1 279 aa3.96□□□□□ -1.78
BRCA1-220ENST00000492859 ZNF430Q9H8G1 570 aaPredicted RBP3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms