RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 PCED1AQ9H1Q7 454 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 ANKRD19PQ9H560 264 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 NMNAT1Q9HAN9 279 aaPredicted RBP10.11□□□□□ -0.79
USP4-214ENST00000491791 POLMQ9NP87 494 aaPredicted RBP10.11□□□□□ -0.79
USP4-214ENST00000491791 ZCCHC3Q9NUD5 404 aaKnown RBP10.11□□□□□ -0.79
USP4-214ENST00000491791 GIN1Q9NXP7 522 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 ACTR10Q9NZ32 417 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 C5AR2Q9P296 337 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 FTSJ1Q9UET6 329 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 SH3GLB1Q9Y371 365 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 SNX11Q9Y5W9 270 aa10.11□□□□□ -0.79
USP4-214ENST00000491791 C2orf74A8MZ97 194 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 SLC28A2O43868 658 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 XPNPEP2O43895 674 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 NOL3O60936 208 aaKnown RBP10.1□□□□□ -0.79
USP4-214ENST00000491791 SOX30O94993 753 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 HMGN2P05204 90 aaKnown RBP10.1□□□□□ -0.79
USP4-214ENST00000491791 SERPIND1P05546 499 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 INHBBP09529 407 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 OR12D1P0DN82 309 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 HOXB3P14651 431 aaPredicted RBP10.1□□□□□ -0.79
USP4-214ENST00000491791 TNFRSF1BP20333 461 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 ELAVL4P26378 380 aaKnown RBP10.1□□□□□ -0.79
USP4-214ENST00000491791 CERS1P27544 350 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 GPC1P35052 558 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 KRT20P35900 424 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 BUD31P41223 144 aaPredicted RBP10.1□□□□□ -0.79
USP4-214ENST00000491791 CRISP1P54107 249 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 SNRPGP62308 76 aaKnown RBP10.1□□□□□ -0.79
USP4-214ENST00000491791 RPS26P62854 115 aaKnown RBP10.1□□□□□ -0.79
USP4-214ENST00000491791 FUT5Q11128 374 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 NFATC3Q12968 1075 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 EIF2B5Q13144 721 aaKnown RBP10.1□□□□□ -0.79
USP4-214ENST00000491791 DCTN2Q13561 401 aaKnown RBP10.1□□□□□ -0.79
USP4-214ENST00000491791 GPR18Q14330 331 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 TBCEQ15813 527 aaPredicted RBP10.1□□□□□ -0.79
USP4-214ENST00000491791 SYPL1Q16563 259 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 NDUFA9Q16795 377 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 PRRT3Q5FWE3 981 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 TMEM201Q5SNT2 666 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 RNLSQ5VYX0 342 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 C18orf63Q68DL7 685 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 ZCCHC12Q6PEW1 402 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 SLC22A18ASQ8N1D0 253 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 SMYD1Q8NB12 490 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 AVL9Q8NBF6 648 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 CCL4L1Q8NHW4 92 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 PHF10Q8WUB8 498 aaKnown RBP10.1□□□□□ -0.79
USP4-214ENST00000491791 RORBQ92753 470 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 MYDGFQ969H8 173 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 ARHGDIGQ99819 225 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 NIPSNAP1Q9BPW8 284 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 ZFYVE21Q9BQ24 234 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 UCK1Q9HA47 277 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 IL21RQ9HBE5 538 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 ACOT13Q9NPJ3 140 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 NECTIN3Q9NQS3 549 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 RLIMQ9NVW2 624 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 DLL3Q9NYJ7 618 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 WSB2Q9NYS7 404 aaPredicted RBP10.1□□□□□ -0.79
USP4-214ENST00000491791 ZNF226Q9NYT6 803 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 CNOT2Q9NZN8 540 aaKnown RBP10.1□□□□□ -0.79
USP4-214ENST00000491791 PTGFRNQ9P2B2 879 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 ERVK-18Q9QC07 812 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 CPNE7Q9UBL6 633 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 REV1Q9UBZ9 1251 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 TMCC3Q9ULS5 477 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 DAPP1Q9UN19 280 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 A4GNTQ9UNA3 340 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 SLC22A7Q9Y694 548 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 ZNF780BQ9Y6R6 833 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 NCOR2Q9Y618 2525 aa10.1□□□□□ -0.79
USP4-214ENST00000491791 FANCMQ8IYD8 2048 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 GPR179Q6PRD1 2367 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 A0A087WV62 115 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 A0A0J9YY10 115 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 MED19A0JLT2 244 aaPredicted RBP10.09□□□□□ -0.79
USP4-214ENST00000491791 SH3PXD2BA1X283 911 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 GSAPA4D1B5 854 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 CLDN24A6NM45 220 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 CLCA1A8K7I4 914 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 J3KTA2 159 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 SLC22A1O15245 554 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 CTSVO60911 334 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 VIPP01282 170 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 GASTP01350 101 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 H1F0P07305 194 aaKnown RBP10.09□□□□□ -0.79
USP4-214ENST00000491791 NR2F1P10589 423 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 CHRNB1P11230 501 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 PIPP12273 146 aaPredicted RBP10.09□□□□□ -0.79
USP4-214ENST00000491791 CYP4B1P13584 511 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 OSMP13725 252 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 PRKAR1BP31321 381 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 FMO3P31513 532 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 MASP1P48740 699 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 BLKP51451 505 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 MAPK10P53779 464 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 CDC42P60953 191 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 BTN3A2P78410 334 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 DUSP2Q05923 314 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms