RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 PPP1R36Q96LQ0 422 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 C7orf26Q96N11 449 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 HBEGFQ99075 208 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 FAIM2Q9BWQ8 316 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 MRPL1Q9BYD6 325 aaKnown RBP8.15□□□□□ -1.1
USP4-213ENST00000488520 LRTM1Q9HBL6 345 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 PRDM7Q9NQW5 492 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 C1orf109Q9NX04 203 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 ABI3Q9P2A4 366 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 PHF11Q9UIL8 331 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 ADAM29Q9UKF5 820 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 FBXW2Q9UKT8 454 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 TMED5Q9Y3A6 229 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 DNAJC15Q9Y5T4 150 aa8.15□□□□□ -1.1
USP4-213ENST00000488520 IGHV1-45A0A0A0MS14 117 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 ZNF860A6NHJ4 632 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 A8MUI8 341 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 IDSB3KWA1 339 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 TMEM233B4DJY2 109 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 RTCAO00442 366 aaKnown RBP8.14□□□□□ -1.11
USP4-213ENST00000488520 PLPP1O14494 284 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 FOXS1O43638 330 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 PRAMEF2O60811 474 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 RDH16O75452 317 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 BMP10O95393 424 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 CLDN14O95500 239 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 SERPINA7P05543 415 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 ANXA4P09525 319 aaPredicted RBP8.14□□□□□ -1.11
USP4-213ENST00000488520 FAM58BPP0C7Q3 252 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 SSTR4P31391 388 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 XCR1P46094 333 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 GSTM5P46439 218 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 SMSP52788 366 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 TRA2BP62995 288 aaKnown RBP8.14□□□□□ -1.11
USP4-213ENST00000488520 TLE4Q04727 773 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 ACTN3Q08043 901 aaPredicted RBP8.14□□□□□ -1.11
USP4-213ENST00000488520 BIKQ13323 160 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 HEPACAMQ14CZ8 416 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 TESK1Q15569 626 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 MINDY4Q4G0A6 757 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 ABHD17BQ5VST6 288 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 FCRLBQ6BAA4 426 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 ADNP2Q6IQ32 1131 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 PAOXQ6QHF9 649 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 RNF165Q6ZSG1 346 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 CPLX4Q7Z7G2 160 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 GPR180Q86V85 440 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 FAM9CQ8IZT9 166 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 TMEM132CQ8N3T6 1108 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 C1orf52Q8N6N3 182 aaKnown RBP8.14□□□□□ -1.11
USP4-213ENST00000488520 FNDC5Q8NAU1 212 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 DNAJB8Q8NHS0 232 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 CDC26Q8NHZ8 85 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 FBLIM1Q8WUP2 373 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 CHTF18Q8WVB6 975 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 TBC1D20Q96BZ9 403 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 PEX11GQ96HA9 241 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 C10orf90Q96M02 699 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 RILPQ96NA2 401 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 SORT1Q99523 831 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 PRPF18Q99633 342 aaKnown RBP8.14□□□□□ -1.11
USP4-213ENST00000488520 NUF2Q9BZD4 464 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 ACPTQ9BZG2 426 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 C20orf27Q9GZN8 174 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 DDX31Q9H8H2 851 aaKnown RBP8.14□□□□□ -1.11
USP4-213ENST00000488520 LYRM4Q9HD34 91 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 C14orf105Q9NVL8 296 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 STMN3Q9NZ72 180 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 HCN3Q9P1Z3 774 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 MARCOQ9UEW3 520 aaPredicted RBP8.14□□□□□ -1.11
USP4-213ENST00000488520 WBP11Q9Y2W2 641 aaKnown RBP8.14□□□□□ -1.11
USP4-213ENST00000488520 ACANP16112 2415 aa8.14□□□□□ -1.11
USP4-213ENST00000488520 ZNF469Q96JG9 3925 aaPredicted RBP8.14□□□□□ -1.11
USP4-213ENST00000488520 NCKAP5O14513 1909 aa8.13□□□□□ -1.11
USP4-213ENST00000488520 ATP6AP2A0A1C7CYW4 349 aa8.13□□□□□ -1.11
USP4-213ENST00000488520 SYNDIG1LA6NDD5 238 aa8.13□□□□□ -1.11
USP4-213ENST00000488520 OR5H15A6NDH6 313 aa8.13□□□□□ -1.11
USP4-213ENST00000488520 PCDH7O60245 1069 aa8.13□□□□□ -1.11
USP4-213ENST00000488520 B4GALT2O60909 372 aa8.13□□□□□ -1.11
USP4-213ENST00000488520 ATP6AP2O75787 350 aa8.13□□□□□ -1.11
USP4-213ENST00000488520 NADKO95544 446 aaPredicted RBP8.13□□□□□ -1.11
USP4-213ENST00000488520 GBAP04062 536 aa8.13□□□□□ -1.11
USP4-213ENST00000488520 FHP07954 510 aa8.13□□□□□ -1.11
USP4-213ENST00000488520 PRPS2P11908 318 aa8.13□□□□□ -1.11
USP4-213ENST00000488520 LBPP18428 481 aa8.13□□□□□ -1.11
USP4-213ENST00000488520 TNNI3P19429 210 aa8.13□□□□□ -1.11
USP4-213ENST00000488520 CERS1P27544 350 aa8.13□□□□□ -1.11
USP4-213ENST00000488520 PPP2R1BP30154 601 aa8.13□□□□□ -1.11
USP4-213ENST00000488520 BSGP35613 385 aa8.13□□□□□ -1.11
USP4-213ENST00000488520 HTR6P50406 440 aa8.13□□□□□ -1.11
USP4-213ENST00000488520 LIM2P55344 173 aa8.13□□□□□ -1.11
USP4-213ENST00000488520 RAB38P57729 211 aa8.13□□□□□ -1.11
USP4-213ENST00000488520 OLR1P78380 273 aa8.13□□□□□ -1.11
USP4-213ENST00000488520 MAT1AQ00266 395 aaKnown RBP8.13□□□□□ -1.11
USP4-213ENST00000488520 OCRLQ01968 901 aa8.13□□□□□ -1.11
USP4-213ENST00000488520 C2orf80Q0P641 193 aa8.13□□□□□ -1.11
USP4-213ENST00000488520 STX4Q12846 297 aa8.13□□□□□ -1.11
USP4-213ENST00000488520 SLC13A2Q13183 592 aa8.13□□□□□ -1.11
USP4-213ENST00000488520 RUNX2Q13950 521 aa8.13□□□□□ -1.11
USP4-213ENST00000488520 SYT16Q17RD7 645 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms