RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 SNX6Q9UNH7 406 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 AFF2P51816 1311 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 CARMIL1Q5VZK9 1371 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.33□□□□□ -1.72
UPF3B-203ENST00000478840 IGHV3-38A0A0C4DH36 116 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 TRBV5-4A0A0C4DH59 114 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 MPHOSPH10O00566 681 aaKnown RBP4.33□□□□□ -1.72
UPF3B-203ENST00000478840 XPO1O14980 1071 aaKnown RBP4.33□□□□□ -1.72
UPF3B-203ENST00000478840 ALOX15BO15296 676 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 CFLARO15519 480 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 RIPK2O43353 540 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 SDC3O75056 442 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 ZNF821O75541 412 aaPredicted RBP4.33□□□□□ -1.72
UPF3B-203ENST00000478840 PALMO75781 387 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 CLDN1O95832 211 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 GSTA1P08263 222 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 IQCF3P0C7M6 154 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 CLUP10909 449 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 RPS2P15880 293 aaKnown RBP4.33□□□□□ -1.72
UPF3B-203ENST00000478840 GLRA2P23416 452 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 PPP2R1AP30153 589 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 MMP12P39900 470 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 GSCP56915 257 aaPredicted RBP4.33□□□□□ -1.72
UPF3B-203ENST00000478840 MRPS6P82932 125 aaKnown RBP4.33□□□□□ -1.72
UPF3B-203ENST00000478840 ZP4Q12836 540 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 ZNF177Q13360 481 aaPredicted RBP4.33□□□□□ -1.72
UPF3B-203ENST00000478840 EXOSC2Q13868 293 aaKnown RBP4.33□□□□□ -1.72
UPF3B-203ENST00000478840 KIAA0141Q14154 515 aaPredicted RBP4.33□□□□□ -1.72
UPF3B-203ENST00000478840 DMKNQ6E0U4 476 aaPredicted RBP4.33□□□□□ -1.72
UPF3B-203ENST00000478840 ASPHD2Q6ICH7 369 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 ATRAIDQ6UW56 229 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 ZNF562Q6V9R5 426 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 C18orf65Q6ZTR6 163 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 CENPUQ71F23 418 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 CARM1Q86X55 608 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 OR5AU1Q8NGC0 362 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 OR1K1Q8NGR3 316 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 SPPL2AQ8TCT8 520 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 ALG9Q9H6U8 611 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 IL1RAPQ9NPH3 570 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 B3GAT2Q9NPZ5 323 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 PLCXD1Q9NUJ7 323 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 FZR1Q9UM11 496 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 ICAM5Q9UMF0 924 aa4.33□□□□□ -1.72
UPF3B-203ENST00000478840 KLF2Q9Y5W3 355 aaPredicted RBP4.33□□□□□ -1.72
UPF3B-203ENST00000478840 NPIPA5A0A0B4J1W7 369 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 TMCO5BA8MYB1 307 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 NPIPA5E9PKD4 350 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 NEDD8-MDP1E9PL57 170 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 RHOBTB1O94844 696 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 ECDO95905 644 aaPredicted RBP4.32□□□□□ -1.72
UPF3B-203ENST00000478840 AMBPP02760 352 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 ANXA4P09525 319 aaPredicted RBP4.32□□□□□ -1.72
UPF3B-203ENST00000478840 FOSL2P15408 326 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 ZNF26P17031 533 aaPredicted RBP4.32□□□□□ -1.72
UPF3B-203ENST00000478840 PRKACGP22612 351 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 PDHA2P29803 388 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 FASTKQ14296 549 aaKnown RBP4.32□□□□□ -1.72
UPF3B-203ENST00000478840 FAM189A2Q15884 450 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 PDK4Q16654 411 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 KNOP1Q1ED39 458 aaKnown RBP4.32□□□□□ -1.72
UPF3B-203ENST00000478840 LRRC23Q53EV4 343 aaPredicted RBP4.32□□□□□ -1.72
UPF3B-203ENST00000478840 CFAP157Q5JU67 520 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 WDR25Q64LD2 544 aaPredicted RBP4.32□□□□□ -1.72
UPF3B-203ENST00000478840 CENPPQ6IPU0 288 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 LCLAT1Q6UWP7 414 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 LPCAT2Q7L5N7 544 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 P4HA3Q7Z4N8 544 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 NUP37Q8NFH4 326 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 OR2T3Q8NH03 318 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 PCNPQ8WW12 178 aaKnown RBP4.32□□□□□ -1.72
UPF3B-203ENST00000478840 SHC3Q92529 594 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 DLX4Q92988 240 aaPredicted RBP4.32□□□□□ -1.72
UPF3B-203ENST00000478840 TBCDQ9BTW9 1192 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 PARLQ9H300 379 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 GORASP2Q9H8Y8 452 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 NRN1Q9NPD7 142 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 GDAP2Q9NXN4 497 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 NDE1Q9NXR1 346 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 RDH8Q9NYR8 311 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 THYN1Q9P016 225 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 CHRNA9Q9UGM1 479 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 EMCNQ9ULC0 261 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP4.32□□□□□ -1.72
UPF3B-203ENST00000478840 RNF6Q9Y252 685 aa4.32□□□□□ -1.72
UPF3B-203ENST00000478840 TTC26A0AVF1 554 aa4.31□□□□□ -1.72
UPF3B-203ENST00000478840 BCLAF3A2AJT9 711 aaKnown RBP4.31□□□□□ -1.72
UPF3B-203ENST00000478840 PDLIM1O00151 329 aa4.31□□□□□ -1.72
UPF3B-203ENST00000478840 FBP2O00757 339 aa4.31□□□□□ -1.72
UPF3B-203ENST00000478840 CYB561D2O14569 222 aa4.31□□□□□ -1.72
UPF3B-203ENST00000478840 IMPA2O14732 288 aa4.31□□□□□ -1.72
UPF3B-203ENST00000478840 FRAT2O75474 233 aaPredicted RBP4.31□□□□□ -1.72
UPF3B-203ENST00000478840 CCDC159P0C7I6 412 aa4.31□□□□□ -1.72
UPF3B-203ENST00000478840 AOC1P19801 751 aa4.31□□□□□ -1.72
UPF3B-203ENST00000478840 ID1P41134 155 aa4.31□□□□□ -1.72
UPF3B-203ENST00000478840 PTGER3P43115 390 aa4.31□□□□□ -1.72
UPF3B-203ENST00000478840 METAP1P53582 386 aa4.31□□□□□ -1.72
UPF3B-203ENST00000478840 RPS27AP62979 156 aaKnown RBP4.31□□□□□ -1.72
UPF3B-203ENST00000478840 SRYQ05066 204 aa4.31□□□□□ -1.72
UPF3B-203ENST00000478840 KRTAP1-1Q07627 177 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms